Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33335 * 122.70550 * 2 1 4 4 S 1.76169 * 108.10140 * 179.88445 * 3 2 1 5 5 C 1.70964 * 90.35909 * 0.32180 * 4 3 2 6 6 S 1.76194 * 124.95296 * 179.83452 * 5 4 3 7 7 C 1.80999 * 99.99918 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.47137 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47154 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00261 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00045 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99908 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00035 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47085 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47146 * 119.99864 * 15 13 11 18 18 H 1.48503 * 109.46892 * 239.99646 * 15 13 11 19 19 N 1.29761 * 110.09602 * 359.81355 * 5 4 3 20 20 H 1.09001 * 109.46953 * 269.72798 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.72396 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.73026 * 1 2 3 23 23 H 1.07996 * 125.94902 * 0.02562 * 3 2 1 24 24 H 1.09001 * 109.47184 * 299.99292 * 7 6 5 25 25 H 1.09001 * 109.47115 * 60.00007 * 7 6 5 26 26 H 1.08998 * 109.47408 * 300.00103 * 8 7 6 27 27 H 1.09001 * 109.47042 * 60.00048 * 8 7 6 28 28 H 1.08998 * 109.47326 * 300.00478 * 9 8 7 29 29 H 1.09001 * 109.46855 * 60.00258 * 9 8 7 30 30 H 1.08998 * 109.47408 * 300.00428 * 10 9 8 31 31 H 1.09001 * 109.47042 * 60.00373 * 10 9 8 32 32 H 0.96999 * 120.00098 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2275 1.1220 0.0000 4 16 3.9323 0.6778 0.0034 5 6 3.5116 -0.9793 -0.0051 6 16 4.6630 -2.3130 -0.0115 7 6 6.2176 -1.3861 -0.0071 8 6 7.3944 -2.3639 -0.0112 9 6 8.7085 -1.5804 -0.0081 10 6 9.8853 -2.5583 -0.0115 11 6 11.1797 -1.7866 -0.0079 12 1 11.1646 -0.7067 -0.0040 13 6 12.3833 -2.4591 -0.0106 14 7 12.4017 -3.7741 -0.0158 15 14 13.9878 -1.5025 -0.0053 16 1 13.6960 -0.0465 0.0009 17 1 14.7710 -1.8561 1.2059 18 1 14.7720 -1.8446 -1.2192 19 7 2.2208 -1.1116 -0.0058 20 1 -0.3633 -0.0049 1.0277 21 1 -0.3634 0.8924 -0.5095 22 1 -0.3633 -0.8876 -0.5180 23 1 1.8344 2.1278 0.0004 24 1 6.2666 -0.7545 -0.8942 25 1 6.2666 -0.7629 0.8858 26 1 7.3453 -2.9953 0.8760 27 1 7.3456 -2.9874 -0.9039 28 1 8.7574 -0.9494 -0.8955 29 1 8.7575 -0.9567 0.8844 30 1 9.8362 -3.1890 0.8761 31 1 9.8365 -3.1824 -0.9038 32 1 13.2485 -4.2473 -0.0173 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385162564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = 13.488336 kcal Electronic energy + Delta-G solvation = -13664.622664 eV Core-core repulsion = 11263.258097 eV Total energy + Delta-G solvation = -2401.364567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.82498 -35.35865 -32.73351 -32.21145 -29.68245 -27.91681 -25.90890 -24.89922 -22.18113 -20.29059 -19.73697 -18.66123 -16.77139 -16.24474 -15.54886 -15.13683 -15.01319 -14.49530 -13.91848 -13.68127 -13.21386 -12.98951 -12.78772 -12.68649 -12.14803 -11.69141 -11.50179 -11.17490 -10.94809 -10.78543 -10.54716 -10.44491 -10.02023 -9.76571 -9.72538 -9.36793 -9.32171 -9.07557 -8.37513 -7.69404 -6.02197 -4.04825 0.40760 0.90449 1.03027 1.52452 2.30495 2.50959 3.29578 3.37228 3.40970 4.23736 4.43929 4.88287 4.89956 4.94337 5.00554 5.29899 5.33831 5.40311 5.49808 5.54085 5.83357 5.95194 5.95404 6.27357 6.60991 6.76694 7.04281 7.41936 7.64690 7.77769 7.97503 8.39383 9.02551 9.59555 11.09155 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.059399 B = 0.003202 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.271826 B = 8743.007751 C = 9177.925682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.079 3.921 3 C -0.272 4.272 4 S 0.134 5.866 5 C 0.026 3.974 6 S 0.008 5.992 7 C -0.126 4.126 8 C -0.102 4.102 9 C -0.103 4.103 10 C 0.020 3.980 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.463 5.463 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.177 0.823 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.998 8.895 0.038 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C -0.415 4.415 4 S 0.385 5.615 5 C -0.360 4.360 6 S 0.243 5.757 7 C -0.275 4.275 8 C -0.142 4.142 9 C -0.143 4.143 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.182 5.182 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.195 0.805 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.301 7.523 0.034 21.650 hybrid contribution 0.162 1.889 0.017 1.896 sum -20.139 9.412 0.051 22.230 Atomic orbital electron populations 1.20365 0.86914 1.03397 1.03044 1.20382 0.98282 0.86305 1.00589 1.26672 0.95086 1.03908 1.15877 1.84183 1.07604 1.00599 1.69121 1.28708 0.98929 1.01360 1.06966 1.85942 0.94902 1.04896 1.89996 1.24131 0.94546 1.02549 1.06301 1.21482 0.92223 0.97124 1.03332 1.21650 0.92888 0.99054 1.00714 1.19112 0.91052 0.94107 0.97431 1.21280 0.91037 0.93076 1.50552 0.92625 1.25032 0.99286 0.94859 0.95328 1.69970 1.26084 1.06516 1.50858 0.86547 0.83720 0.80198 0.77605 1.19745 1.20998 1.21004 1.66522 1.02589 1.30898 1.18181 0.90534 0.90640 0.90476 0.80547 0.88851 0.88862 0.90972 0.90977 0.92998 0.93005 0.96442 0.96444 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.01 0.37 -0.23 16 2 C 0.08 0.90 6.74 -84.19 -0.57 0.33 16 3 C -0.27 -2.73 11.10 29.02 0.32 -2.41 16 4 S 0.13 1.50 21.54 -107.50 -2.32 -0.81 16 5 C 0.03 0.36 7.59 51.89 0.39 0.75 16 6 S 0.01 0.11 22.31 -107.50 -2.40 -2.29 16 7 C -0.13 -1.64 4.63 37.16 0.17 -1.47 16 8 C -0.10 -1.60 5.22 -26.73 -0.14 -1.74 16 9 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 15 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 N -0.46 -6.57 10.59 -10.94 -0.12 -6.68 16 20 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 24 H 0.09 1.14 7.97 -51.92 -0.41 0.73 16 25 H 0.09 1.14 7.97 -51.92 -0.41 0.73 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -30.91 302.17 -9.29 -40.20 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -4.60 Total: -5.55 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -0.13 Total: -19.85 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.62 Total: -32.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -4.71 Total: -3.10 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.91 -9.29 -40.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385162564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.689 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds