Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33335 * 122.70550 * 2 1 4 4 S 1.76169 * 108.10140 * 179.88445 * 3 2 1 5 5 C 1.70964 * 90.35909 * 0.32180 * 4 3 2 6 6 S 1.76194 * 124.95296 * 179.83452 * 5 4 3 7 7 C 1.80999 * 99.99918 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.47137 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47154 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00261 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00045 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99908 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00035 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47085 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47146 * 119.99864 * 15 13 11 18 18 H 1.48503 * 109.46892 * 239.99646 * 15 13 11 19 19 N 1.29761 * 110.09602 * 359.81355 * 5 4 3 20 20 H 1.09001 * 109.46953 * 269.72798 * 1 2 3 21 21 H 1.09000 * 109.47318 * 29.72396 * 1 2 3 22 22 H 1.09000 * 109.47161 * 149.73026 * 1 2 3 23 23 H 1.07996 * 125.94902 * 0.02562 * 3 2 1 24 24 H 1.09001 * 109.47184 * 299.99292 * 7 6 5 25 25 H 1.09001 * 109.47115 * 60.00007 * 7 6 5 26 26 H 1.08998 * 109.47408 * 300.00103 * 8 7 6 27 27 H 1.09001 * 109.47042 * 60.00048 * 8 7 6 28 28 H 1.08998 * 109.47326 * 300.00478 * 9 8 7 29 29 H 1.09001 * 109.46855 * 60.00258 * 9 8 7 30 30 H 1.08998 * 109.47408 * 300.00428 * 10 9 8 31 31 H 1.09001 * 109.47042 * 60.00373 * 10 9 8 32 32 H 0.96999 * 120.00098 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2275 1.1220 0.0000 4 16 3.9323 0.6778 0.0034 5 6 3.5116 -0.9793 -0.0051 6 16 4.6630 -2.3130 -0.0115 7 6 6.2176 -1.3861 -0.0071 8 6 7.3944 -2.3639 -0.0112 9 6 8.7085 -1.5804 -0.0081 10 6 9.8853 -2.5583 -0.0115 11 6 11.1797 -1.7866 -0.0079 12 1 11.1646 -0.7067 -0.0040 13 6 12.3833 -2.4591 -0.0106 14 7 12.4017 -3.7741 -0.0158 15 14 13.9878 -1.5025 -0.0053 16 1 13.6960 -0.0465 0.0009 17 1 14.7710 -1.8561 1.2059 18 1 14.7720 -1.8446 -1.2192 19 7 2.2208 -1.1116 -0.0058 20 1 -0.3633 -0.0049 1.0277 21 1 -0.3634 0.8924 -0.5095 22 1 -0.3633 -0.8876 -0.5180 23 1 1.8344 2.1278 0.0004 24 1 6.2666 -0.7545 -0.8942 25 1 6.2666 -0.7629 0.8858 26 1 7.3453 -2.9953 0.8760 27 1 7.3456 -2.9874 -0.9039 28 1 8.7574 -0.9494 -0.8955 29 1 8.7575 -0.9567 0.8844 30 1 9.8362 -3.1890 0.8761 31 1 9.8365 -3.1824 -0.9038 32 1 13.2485 -4.2473 -0.0173 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385162564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = -4.100700 kcal Electronic energy + Delta-G solvation = -13665.385382 eV Core-core repulsion = 11263.258097 eV Total energy + Delta-G solvation = -2402.127284 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70281 -36.93072 -34.69457 -32.99697 -31.39899 -28.62630 -27.41793 -26.15784 -23.77027 -21.89579 -20.64933 -19.54283 -18.40971 -17.70357 -16.72560 -16.53123 -16.06695 -16.00458 -14.88878 -14.67148 -14.56037 -14.40874 -13.77115 -13.60594 -13.54665 -13.24098 -12.94414 -12.47567 -12.40911 -12.34366 -12.26977 -11.71977 -11.44261 -11.32076 -11.02673 -10.87663 -10.66607 -10.54337 -10.20574 -8.68166 -8.18709 -6.29483 -0.47568 -0.01261 0.05267 0.68241 1.29918 1.41315 1.41705 1.54761 1.64200 2.42262 3.14944 3.45359 3.75163 3.82354 4.22261 4.31397 4.32630 4.47027 4.61748 4.75445 4.79304 4.81061 4.85205 5.06998 5.23990 5.27184 5.30273 5.55508 5.77806 5.88622 6.26539 6.55078 6.88832 7.40014 8.93368 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.059399 B = 0.003202 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.271826 B = 8743.007751 C = 9177.925682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.054 3.946 3 C -0.257 4.257 4 S 0.155 5.845 5 C -0.001 4.001 6 S -0.016 6.016 7 C -0.112 4.112 8 C -0.094 4.094 9 C -0.091 4.091 10 C 0.020 3.980 11 C -0.541 4.541 12 H 0.063 0.937 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.964 3.036 16 H -0.260 1.260 17 H -0.279 1.279 18 H -0.280 1.280 19 N -0.490 5.490 20 H 0.085 0.915 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.212 0.788 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.059 0.941 30 H -0.008 1.008 31 H -0.008 1.008 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.777 11.439 0.047 24.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C -0.399 4.399 4 S 0.406 5.594 5 C -0.386 4.386 6 S 0.218 5.782 7 C -0.262 4.262 8 C -0.133 4.133 9 C -0.131 4.131 10 C -0.017 4.017 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.201 4.201 14 N -0.576 5.576 15 Si 0.789 3.211 16 H -0.184 1.184 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.210 5.210 20 H 0.104 0.896 21 H 0.120 0.880 22 H 0.088 0.912 23 H 0.229 0.771 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.095 10.078 0.043 23.379 hybrid contribution 0.310 1.137 0.015 1.179 sum -20.785 11.216 0.058 23.618 Atomic orbital electron populations 1.20473 0.84656 1.04366 1.03945 1.20928 0.99857 0.85980 1.01170 1.27144 0.94167 1.05162 1.13471 1.84043 1.08549 0.98624 1.68224 1.28597 0.98904 1.02268 1.08819 1.85937 0.95575 1.05948 1.90762 1.23916 0.93133 1.01689 1.07427 1.21254 0.91766 0.97214 1.03084 1.21420 0.92236 0.97959 1.01447 1.19046 0.93084 0.94620 0.94968 1.21765 0.92340 0.93697 1.50079 0.91919 1.25997 1.03350 0.95827 0.94896 1.70105 1.27175 1.08325 1.51952 0.85415 0.78845 0.79211 0.77676 1.18378 1.20522 1.20530 1.66522 1.03174 1.32849 1.18438 0.89592 0.88013 0.91201 0.77120 0.87728 0.87742 0.91334 0.91339 0.92189 0.92200 0.98943 0.98945 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.31 71.24 0.73 -0.26 16 2 C 0.05 1.13 6.74 41.41 0.28 1.41 16 3 C -0.26 -4.38 11.10 66.71 0.74 -3.64 16 4 S 0.16 3.15 21.54 -56.49 -1.22 1.93 16 5 C 0.00 -0.02 7.59 130.55 0.99 0.97 16 6 S -0.02 -0.43 22.31 -56.49 -1.26 -1.69 16 7 C -0.11 -2.81 4.63 71.98 0.33 -2.47 16 8 C -0.09 -2.92 5.22 30.59 0.16 -2.76 16 9 C -0.09 -3.45 5.15 30.59 0.16 -3.30 16 10 C 0.02 1.04 4.97 29.85 0.15 1.18 16 11 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 13 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 14 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 15 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 16 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 N -0.49 -13.49 10.59 -188.53 -2.00 -15.49 16 20 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.10 0.78 8.12 -2.39 -0.02 0.76 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.21 1.98 8.06 -2.91 -0.02 1.95 16 24 H 0.10 2.38 7.97 -2.39 -0.02 2.36 16 25 H 0.10 2.38 7.97 -2.39 -0.02 2.36 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -67.13 302.17 3.17 -63.96 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 1.09 Total: 0.66 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 4.24 Total: -38.64 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.71 Total: -72.12 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.48 Total: 0.23 kcal Total: -67.13 3.17 -63.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385162564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.864 kcal (2) G-P(sol) polarization free energy of solvation -67.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds