Wall clock time and date at job start Mon Mar 30 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47245 * 300.00482 * 3 2 1 6 6 H 1.48504 * 109.46921 * 60.00349 * 3 2 1 7 7 C 1.37884 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99896 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.42903 * 114.00078 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46758 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.47578 * 65.00618 * 12 11 10 14 14 C 1.35908 * 117.00024 * 179.97438 * 13 12 11 15 15 C 1.38754 * 120.46854 * 359.97438 * 14 13 12 16 16 N 1.31814 * 120.71141 * 179.97438 * 15 14 13 17 17 C 1.31862 * 121.79180 * 0.02562 * 16 15 14 18 18 C 1.38345 * 120.87078 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 120.40276 * 179.97438 * 18 17 16 20 20 C 1.38689 * 119.19191 * 359.97438 * 18 17 16 21 21 H 0.96997 * 119.99862 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47634 * 59.99796 * 9 7 2 23 23 H 1.09000 * 109.47396 * 299.99561 * 9 7 2 24 24 H 1.08999 * 109.46908 * 60.00181 * 11 10 9 25 25 H 1.09000 * 109.46940 * 299.99941 * 11 10 9 26 26 H 1.09003 * 109.47475 * 304.99557 * 12 11 10 27 27 H 1.09010 * 109.46977 * 185.00142 * 12 11 10 28 28 H 1.08002 * 119.64620 * 359.95773 * 15 14 13 29 29 H 1.08000 * 119.56592 * 179.97438 * 17 16 15 30 30 H 1.08006 * 120.81276 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8755 0.0000 12 6 2.6481 -5.9561 0.0006 13 8 3.3874 -5.8891 1.2218 14 6 4.3939 -6.7879 1.3838 15 6 4.6715 -7.7194 0.3936 16 7 5.6469 -8.5929 0.5455 17 6 6.3925 -8.6197 1.6328 18 6 6.1758 -7.7235 2.6643 19 17 7.1642 -7.7700 4.0906 20 6 5.1594 -6.7875 2.5448 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 0.9447 -4.9827 -0.8897 25 1 0.9453 -4.9822 0.8903 26 1 3.3217 -5.7960 -0.8413 27 1 2.1821 -6.9376 -0.0885 28 1 4.0820 -7.7291 -0.5112 29 1 7.1821 -9.3514 1.7197 30 1 4.9676 -6.0753 3.3339 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385187374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:46 Heat of formation + Delta-G solvation = -60.393666 kcal Electronic energy + Delta-G solvation = -15897.754476 eV Core-core repulsion = 12912.556473 eV Total energy + Delta-G solvation = -2985.198003 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82341 -38.49378 -36.90121 -36.58131 -32.89032 -32.46903 -30.80045 -29.60706 -27.00537 -24.34350 -23.56748 -22.42767 -21.86006 -18.59329 -17.19810 -16.96750 -16.43402 -16.40231 -15.45439 -15.19558 -14.65452 -14.45822 -14.04240 -13.85450 -13.42665 -12.99389 -12.68858 -12.29987 -11.98234 -11.72701 -11.49043 -11.33126 -10.89181 -10.81608 -10.72870 -10.11277 -9.80284 -9.62462 -9.16201 -8.93831 -8.63715 -8.26817 -6.15738 -4.17519 0.65371 0.98111 1.66835 3.06273 3.26890 3.33534 3.40129 3.42003 4.21041 4.28163 4.35920 4.56215 4.60145 4.78458 4.93755 5.09314 5.21162 5.24602 5.61698 5.67001 5.71171 5.78539 5.97174 6.11309 6.99136 7.12090 7.34443 7.56703 7.74448 8.07731 8.46282 8.95148 9.47580 10.95858 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.003703 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.028646 B = 7560.319802 C = 8260.029833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.060 3.940 13 O -0.288 6.288 14 C 0.108 3.892 15 C 0.015 3.985 16 N -0.433 5.433 17 C 0.064 3.936 18 C -0.048 4.048 19 Cl -0.050 7.050 20 C -0.107 4.107 21 H 0.264 0.736 22 H 0.007 0.993 23 H 0.007 0.993 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.134 -17.351 3.750 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.311 6.311 11 C -0.015 4.015 12 C -0.015 4.015 13 O -0.198 6.198 14 C 0.058 3.942 15 C -0.144 4.144 16 N -0.142 5.142 17 C -0.094 4.094 18 C -0.077 4.077 19 Cl -0.022 7.022 20 C -0.134 4.134 21 H 0.074 0.926 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.183 0.817 29 H 0.182 0.818 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.330 -17.617 3.332 20.212 hybrid contribution -0.131 1.412 0.620 1.547 sum 9.199 -16.205 3.952 19.049 Atomic orbital electron populations 1.69965 1.06118 1.27154 1.50527 1.24949 0.94987 0.99482 0.95042 0.86274 0.80049 0.82483 0.77669 1.19445 1.20795 1.20773 1.21084 0.94153 0.89265 1.50882 0.91444 1.20251 0.88719 0.83463 0.95537 1.87925 1.35331 1.12570 1.95233 1.22279 0.93051 0.85462 1.00753 1.23134 0.94133 0.99104 0.85096 1.86283 1.42263 1.51080 1.40220 1.20020 0.89761 0.90199 0.94197 1.23109 0.97976 0.93594 0.99678 1.67659 1.03859 1.20974 1.21751 1.22605 0.99899 0.98533 0.88392 1.21832 0.95662 0.98992 0.91169 1.98389 1.68365 1.97892 1.37518 1.20845 0.94506 0.99945 0.98086 0.92642 0.97545 0.97481 0.91751 0.93092 0.90717 0.90753 0.81656 0.81794 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.11 9.43 -34.44 -0.32 -15.43 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.23 5.69 36.00 0.20 5.44 16 10 O -0.39 -9.20 10.29 -40.08 -0.41 -9.62 16 11 C 0.06 1.06 6.32 37.15 0.23 1.29 16 12 C 0.06 0.80 5.13 37.15 0.19 0.99 16 13 O -0.29 -4.45 10.11 -24.29 -0.25 -4.69 16 14 C 0.11 1.43 6.71 -39.08 -0.26 1.17 16 15 C 0.01 0.18 10.22 -17.37 -0.18 0.00 16 16 N -0.43 -5.29 10.35 -13.09 -0.14 -5.42 16 17 C 0.06 0.69 10.98 -17.50 -0.19 0.50 16 18 C -0.05 -0.52 6.34 -39.38 -0.25 -0.77 16 19 Cl -0.05 -0.49 28.99 -51.86 -1.50 -1.99 16 20 C -0.11 -1.32 9.93 -39.11 -0.39 -1.71 16 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 27 H 0.07 0.72 7.68 -51.92 -0.40 0.32 16 28 H 0.17 1.61 6.32 -52.49 -0.33 1.28 16 29 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -31.93 286.59 -6.54 -38.47 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: -3.21 Total: -4.91 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -1.06 Total: -6.99 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: 0.60 Total: -31.29 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -0.66 Total: -14.31 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.93 -6.54 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.925 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds