Wall clock time and date at job start Mon Mar 30 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48501 * 109.47242 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47245 * 300.00482 * 3 2 1 6 6 H 1.48504 * 109.46921 * 60.00349 * 3 2 1 7 7 C 1.37884 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99896 * 359.97438 * 7 2 1 10 10 O 1.42905 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.42903 * 114.00078 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.46758 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.47578 * 65.00618 * 12 11 10 14 14 C 1.35908 * 117.00024 * 179.97438 * 13 12 11 15 15 C 1.38754 * 120.46854 * 359.97438 * 14 13 12 16 16 N 1.31814 * 120.71141 * 179.97438 * 15 14 13 17 17 C 1.31862 * 121.79180 * 0.02562 * 16 15 14 18 18 C 1.38345 * 120.87078 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 120.40276 * 179.97438 * 18 17 16 20 20 C 1.38689 * 119.19191 * 359.97438 * 18 17 16 21 21 H 0.96997 * 119.99862 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47634 * 59.99796 * 9 7 2 23 23 H 1.09000 * 109.47396 * 299.99561 * 9 7 2 24 24 H 1.08999 * 109.46908 * 60.00181 * 11 10 9 25 25 H 1.09000 * 109.46940 * 299.99941 * 11 10 9 26 26 H 1.09003 * 109.47475 * 304.99557 * 12 11 10 27 27 H 1.09010 * 109.46977 * 185.00142 * 12 11 10 28 28 H 1.08002 * 119.64620 * 359.95773 * 15 14 13 29 29 H 1.08000 * 119.56592 * 179.97438 * 17 16 15 30 30 H 1.08006 * 120.81276 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5651 -4.8755 0.0000 12 6 2.6481 -5.9561 0.0006 13 8 3.3874 -5.8891 1.2218 14 6 4.3939 -6.7879 1.3838 15 6 4.6715 -7.7194 0.3936 16 7 5.6469 -8.5929 0.5455 17 6 6.3925 -8.6197 1.6328 18 6 6.1758 -7.7235 2.6643 19 17 7.1642 -7.7700 4.0906 20 6 5.1594 -6.7875 2.5448 21 1 -0.4850 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6248 -2.5571 0.8897 24 1 0.9447 -4.9827 -0.8897 25 1 0.9453 -4.9822 0.8903 26 1 3.3217 -5.7960 -0.8413 27 1 2.1821 -6.9376 -0.0885 28 1 4.0820 -7.7291 -0.5112 29 1 7.1821 -9.3514 1.7197 30 1 4.9676 -6.0753 3.3339 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385187374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:46 Heat of formation + Delta-G solvation = -81.591950 kcal Electronic energy + Delta-G solvation = -15898.673702 eV Core-core repulsion = 12912.556473 eV Total energy + Delta-G solvation = -2986.117229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.76538 -39.57869 -38.32984 -37.67018 -34.97858 -33.48049 -31.90096 -30.81870 -29.00852 -25.39116 -24.60301 -24.44274 -23.01831 -19.58744 -18.73637 -18.02905 -17.85413 -17.79291 -16.84991 -16.44839 -16.17339 -16.06870 -15.42912 -14.96491 -14.62510 -14.23624 -13.74029 -13.72102 -13.24777 -13.13785 -12.97852 -12.72729 -12.50525 -12.28193 -12.23689 -11.95830 -11.29129 -10.91856 -10.72585 -10.51901 -10.28136 -9.57359 -8.34288 -6.46348 -0.23586 0.05302 0.82101 1.39530 1.40471 1.55221 2.06508 2.33366 2.52261 2.99862 3.07351 3.38863 3.46983 3.69050 3.83206 3.99311 4.12759 4.14587 4.42317 4.50571 4.64416 4.76710 4.78340 4.84579 5.15748 5.21785 5.52897 5.93642 6.12892 6.49696 6.67821 6.78648 7.25625 8.78112 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.003703 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.028646 B = 7560.319802 C = 8260.029833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.049 3.951 12 C 0.064 3.936 13 O -0.318 6.318 14 C 0.089 3.911 15 C 0.018 3.982 16 N -0.447 5.447 17 C 0.070 3.930 18 C -0.048 4.048 19 Cl -0.038 7.038 20 C -0.118 4.118 21 H 0.271 0.729 22 H -0.006 1.006 23 H -0.013 1.013 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.187 0.813 29 H 0.192 0.808 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.201 -17.872 3.514 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.589 4.589 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.331 6.331 11 C -0.028 4.028 12 C -0.010 4.010 13 O -0.230 6.230 14 C 0.040 3.960 15 C -0.140 4.140 16 N -0.157 5.157 17 C -0.088 4.088 18 C -0.077 4.077 19 Cl -0.009 7.009 20 C -0.145 4.145 21 H 0.080 0.920 22 H 0.012 0.988 23 H 0.004 0.996 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.137 0.863 28 H 0.204 0.796 29 H 0.208 0.792 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.397 -18.169 3.096 21.161 hybrid contribution -0.443 1.448 0.743 1.687 sum 9.954 -16.721 3.839 19.834 Atomic orbital electron populations 1.70057 1.07654 1.28648 1.50446 1.25923 0.95961 1.03276 0.93862 0.85161 0.78599 0.77435 0.78374 1.19051 1.19438 1.19657 1.21423 0.94054 0.91034 1.52343 0.92293 1.19853 0.88537 0.84438 0.93832 1.87864 1.35526 1.14346 1.95323 1.22690 0.94903 0.83444 1.01729 1.23188 0.93495 0.99527 0.84820 1.86216 1.43318 1.52390 1.41098 1.20139 0.89968 0.90727 0.95122 1.23397 0.97894 0.92810 0.99893 1.67742 1.04279 1.21250 1.22391 1.23068 0.99768 0.98383 0.87629 1.21860 0.95421 0.98652 0.91808 1.98394 1.67854 1.97827 1.36810 1.21008 0.94969 1.00386 0.98101 0.91965 0.98791 0.99561 0.89638 0.93226 0.90000 0.86324 0.79638 0.79167 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 2 C 0.01 0.49 5.46 84.66 0.46 0.95 16 3 Si 0.98 44.33 29.54 68.60 2.03 46.36 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -32.92 9.43 25.60 0.24 -32.68 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.57 5.69 71.23 0.41 11.97 16 10 O -0.41 -19.72 10.29 -144.35 -1.49 -21.21 16 11 C 0.05 1.66 6.32 71.98 0.45 2.11 16 12 C 0.06 1.62 5.13 71.98 0.37 1.99 16 13 O -0.32 -9.72 10.11 -87.88 -0.89 -10.61 16 14 C 0.09 2.30 6.71 22.59 0.15 2.45 16 15 C 0.02 0.40 10.22 84.82 0.87 1.26 16 16 N -0.45 -10.02 10.35 -195.34 -2.02 -12.04 16 17 C 0.07 1.35 10.98 84.71 0.93 2.28 16 18 C -0.05 -1.00 6.34 22.40 0.14 -0.86 16 19 Cl -0.04 -0.67 28.99 -2.72 -0.08 -0.75 16 20 C -0.12 -2.86 9.93 22.58 0.22 -2.63 16 21 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 22 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 24 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.95 7.68 -2.39 -0.02 1.93 16 27 H 0.12 1.95 7.68 -2.38 -0.02 1.93 16 28 H 0.19 3.15 6.32 -2.91 -0.02 3.13 16 29 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -68.89 286.59 3.23 -65.66 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: 1.15 Total: 0.81 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.25 Total: -13.14 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -1.74 Total: -67.12 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -2.37 Total: -31.81 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -68.89 3.23 -65.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385187374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.933 kcal (2) G-P(sol) polarization free energy of solvation -68.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds