Wall clock time and date at job start Mon Mar 30 2020 06:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46974 * 2 1 4 4 S 1.81399 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.81405 * 102.99706 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.46754 * 180.02562 * 5 4 3 7 7 N 1.29024 * 124.91498 * 89.99662 * 6 5 4 8 8 C 1.31786 * 117.12171 * 179.97438 * 7 6 5 9 9 C 1.50704 * 122.74835 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.46737 * 304.96834 * 9 8 7 11 11 H 1.08005 * 120.00306 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99695 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99741 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00355 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47224 * 89.99806 * 14 12 10 16 16 H 1.48497 * 109.47499 * 209.99518 * 14 12 10 17 17 H 1.48499 * 109.47301 * 330.00082 * 14 12 10 18 18 C 1.33642 * 114.50140 * 0.02562 * 8 7 6 19 19 S 1.70974 * 124.91478 * 269.69416 * 6 5 4 20 20 H 1.09000 * 109.47050 * 59.99902 * 1 2 3 21 21 H 1.08998 * 109.46509 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00073 * 1 2 3 23 23 H 1.09000 * 109.47380 * 240.00698 * 2 1 3 24 24 H 1.08996 * 109.47129 * 119.99612 * 2 1 3 25 25 H 1.09004 * 109.46930 * 59.99993 * 3 2 1 26 26 H 1.09004 * 109.47059 * 300.00392 * 3 2 1 27 27 H 1.09000 * 109.47133 * 299.99843 * 5 4 3 28 28 H 1.08998 * 109.47280 * 60.00592 * 5 4 3 29 29 H 1.08995 * 109.47521 * 64.97075 * 9 8 7 30 30 H 1.09000 * 109.46864 * 184.97679 * 9 8 7 31 31 H 0.97002 * 119.99868 * 180.02562 * 13 12 10 32 32 H 1.07999 * 126.03692 * 180.02562 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4426 0.0008 5 6 4.2620 3.2102 0.0015 6 6 5.7594 3.3801 0.0015 7 7 6.4932 3.4637 -1.0565 8 6 7.7905 3.6113 -0.8777 9 6 8.7637 3.7227 -2.0229 10 6 8.6049 2.5333 -2.9345 11 1 7.8723 1.7729 -2.7076 12 6 9.3943 2.4163 -4.0589 13 7 9.2554 1.3785 -4.8548 14 14 10.6610 3.7316 -4.4519 15 1 11.9540 3.3809 -3.8111 16 1 10.8450 3.8180 -5.9229 17 1 10.1913 5.0417 -3.9340 18 6 8.1723 3.6541 0.4023 19 16 6.7309 3.4972 1.4035 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 3.8434 3.6800 -0.8886 28 1 3.8427 3.6795 0.8914 29 1 8.5648 4.6375 -2.5812 30 1 9.7815 3.7487 -1.6336 31 1 9.8110 1.2959 -5.6456 32 1 9.1848 3.7696 0.7598 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388710866.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:21 Heat of formation + Delta-G solvation = 4.907486 kcal Electronic energy + Delta-G solvation = -14008.503608 eV Core-core repulsion = 11606.766947 eV Total energy + Delta-G solvation = -2401.736660 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.79887 -35.58472 -35.37151 -33.76058 -31.10914 -29.14037 -28.14410 -25.46086 -23.49422 -22.34999 -20.69538 -19.04972 -18.44681 -17.42663 -16.45401 -16.37016 -16.29605 -15.77882 -15.10603 -14.93924 -14.59798 -14.39661 -14.12565 -13.75337 -13.67834 -13.25438 -13.16744 -12.56673 -12.42252 -12.14368 -11.89448 -11.82308 -11.72957 -11.61081 -11.03293 -10.78467 -10.49107 -10.28033 -9.49382 -8.75235 -8.27652 -6.32787 -0.42686 0.44464 0.70499 0.78090 1.36260 1.39971 1.51374 1.55514 2.06268 2.36581 3.01747 3.08560 3.84537 3.89956 3.95032 4.14165 4.36306 4.38515 4.41821 4.55668 4.56118 4.65375 4.84815 4.88161 5.14847 5.18224 5.19470 5.28476 5.38085 5.55727 6.26928 6.71328 6.99432 7.28474 8.90054 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.004986 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.384192 B = 5614.116288 C = 6607.892295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.071 4.071 4 S -0.304 6.304 5 C 0.004 3.996 6 C 0.031 3.969 7 N -0.483 5.483 8 C 0.077 3.923 9 C 0.055 3.945 10 C -0.515 4.515 11 H 0.019 0.981 12 C 0.003 3.997 13 N -0.953 5.953 14 Si 0.957 3.043 15 H -0.258 1.258 16 H -0.284 1.284 17 H -0.245 1.245 18 C -0.267 4.267 19 S 0.174 5.826 20 H 0.059 0.941 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.137 0.863 29 H 0.035 0.965 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.740 4.992 15.670 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.148 4.148 3 C -0.219 4.219 4 S -0.077 6.077 5 C -0.147 4.147 6 C -0.247 4.247 7 N -0.199 5.199 8 C -0.054 4.054 9 C 0.015 3.985 10 C -0.553 4.553 11 H 0.038 0.962 12 C -0.193 4.193 13 N -0.594 5.594 14 Si 0.779 3.221 15 H -0.183 1.183 16 H -0.209 1.209 17 H -0.168 1.168 18 C -0.407 4.407 19 S 0.428 5.572 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.106 0.894 27 H 0.126 0.874 28 H 0.155 0.845 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -13.459 4.033 16.100 21.368 hybrid contribution 0.499 0.966 -1.599 1.933 sum -12.960 4.998 14.501 20.080 Atomic orbital electron populations 1.21724 0.92674 1.02818 1.02746 1.21283 0.97453 0.93382 1.02715 1.23547 0.89622 1.02435 1.06326 1.87752 1.11482 1.10266 1.98233 1.21811 0.88938 0.95748 1.08220 1.26482 1.00613 1.05466 0.92150 1.65978 1.06176 1.14837 1.32916 1.20498 0.89960 0.99512 0.95399 1.18268 0.92985 0.96504 0.90742 1.21061 1.19658 1.06396 1.08209 0.96227 1.26051 0.99663 0.98269 0.95318 1.70089 1.42011 1.31824 1.15430 0.85568 0.79000 0.79940 0.77582 1.18285 1.20924 1.16796 1.27210 1.04948 1.13376 0.95145 1.83053 0.96928 1.67096 1.10142 0.92204 0.91518 0.91277 0.92531 0.91174 0.87648 0.89361 0.87449 0.84510 0.94732 0.93039 0.92408 0.78287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.11 -1.93 5.94 30.60 0.18 -1.75 16 3 C -0.07 -1.33 5.94 71.98 0.43 -0.91 16 4 S -0.30 -8.90 21.72 -56.49 -1.23 -10.13 16 5 C 0.00 0.10 6.52 71.24 0.46 0.56 16 6 C 0.03 1.08 6.65 88.52 0.59 1.67 16 7 N -0.48 -21.92 10.39 -179.39 -1.86 -23.78 16 8 C 0.08 3.48 6.02 41.52 0.25 3.73 16 9 C 0.05 2.74 4.54 29.10 0.13 2.87 16 10 C -0.51 -31.82 9.55 25.60 0.24 -31.58 16 11 H 0.02 1.38 7.98 -2.91 -0.02 1.36 16 12 C 0.00 0.20 5.47 84.65 0.46 0.66 16 13 N -0.95 -62.40 13.96 21.45 0.30 -62.10 16 14 Si 0.96 44.87 27.47 68.60 1.88 46.75 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 18 C -0.27 -9.40 11.07 66.78 0.74 -8.66 16 19 S 0.17 4.98 23.18 -56.49 -1.31 3.67 16 20 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 21 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.03 1.72 7.20 -2.39 -0.02 1.70 16 30 H 0.05 2.32 7.46 -2.39 -0.02 2.31 16 31 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 32 H 0.20 5.67 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -76.70 301.35 3.03 -73.67 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.04 Total: 6.34 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.20 Total: -34.42 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.56 Total: -85.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -2.54 Total: -6.46 kcal Total: -76.70 3.03 -73.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388710866.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.579 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds