Wall clock time and date at job start Mon Mar 30 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39567 * 120.51499 * 209.32878 * 3 2 1 5 5 C 1.37820 * 120.11033 * 179.71752 * 4 3 2 6 6 C 1.39290 * 121.22735 * 0.57180 * 5 4 3 7 7 O 1.35793 * 119.46262 * 179.68787 * 6 5 4 8 8 C 1.42901 * 117.00239 * 0.02612 * 7 6 5 9 9 F 1.39901 * 109.47027 * 59.99897 * 8 7 6 10 10 F 1.39898 * 109.46837 * 179.97438 * 8 7 6 11 11 F 1.39899 * 109.46961 * 299.99749 * 8 7 6 12 12 C 1.38026 * 121.06734 * 359.71497 * 6 5 4 13 13 C 1.40663 * 119.79541 * 359.97438 * 12 6 5 14 14 C 1.40838 * 120.58278 * 179.97438 * 13 12 6 15 15 H 1.07996 * 119.99715 * 150.17863 * 14 13 12 16 16 C 1.40220 * 119.99963 * 330.17688 * 14 13 12 17 17 N 1.30673 * 119.99906 * 161.87437 * 16 14 13 18 18 Si 1.86800 * 120.00441 * 341.87786 * 16 14 13 19 19 H 1.48492 * 109.47451 * 95.38887 * 18 16 14 20 20 H 1.48503 * 109.46983 * 215.39219 * 18 16 14 21 21 H 1.48510 * 109.46913 * 335.38689 * 18 16 14 22 22 H 1.07997 * 119.94833 * 0.02562 * 4 3 2 23 23 H 1.07993 * 119.38678 * 180.26429 * 5 4 3 24 24 H 1.08001 * 120.10064 * 180.02562 * 12 6 5 25 25 H 0.96998 * 119.99961 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2762 1.0492 0.5889 5 6 4.6543 1.0385 0.5893 6 6 5.3685 -0.0012 -0.0017 7 8 6.7261 0.0278 0.0138 8 6 7.3439 1.1480 0.6504 9 9 6.9515 1.1967 1.9924 10 9 8.7349 1.0179 0.5761 11 9 6.9502 2.3259 0.0064 12 6 4.7187 -1.0599 -0.6033 13 6 3.3127 -1.0968 -0.6233 14 6 2.6326 -2.1688 -1.2331 15 1 1.6616 -2.4696 -0.8684 16 6 3.2163 -2.8456 -2.3136 17 7 2.7836 -4.0310 -2.6527 18 14 4.6125 -2.0526 -3.2683 19 1 5.9124 -2.5325 -2.7345 20 1 4.5011 -2.4183 -4.7033 21 1 4.5335 -0.5764 -3.1261 22 1 2.7434 1.8679 1.0496 23 1 5.1905 1.8537 1.0521 24 1 5.2880 -1.8580 -1.0565 25 1 3.1876 -4.4993 -3.3999 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396071446.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:42 Heat of formation + Delta-G solvation = -155.990828 kcal Electronic energy + Delta-G solvation = -18547.778759 eV Core-core repulsion = 14883.178367 eV Total energy + Delta-G solvation = -3664.600392 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.17349 -47.92864 -47.72925 -39.42955 -37.15956 -35.12347 -34.04499 -30.97657 -29.80964 -26.28399 -25.27652 -22.67929 -21.74559 -19.48365 -18.86393 -18.83369 -17.87263 -17.25566 -16.14439 -14.99478 -14.84427 -14.74619 -14.55382 -14.22617 -14.21823 -14.05929 -13.82421 -13.73730 -13.37151 -12.84613 -12.73890 -12.66856 -12.20299 -11.69825 -11.49567 -11.20438 -11.16136 -10.53919 -10.38997 -10.06222 -9.52625 -8.19897 -7.71306 -7.44673 -5.04025 1.69648 1.89552 2.24035 2.88788 2.97446 3.07402 3.19212 3.63547 3.72961 3.73934 4.11080 4.27855 4.29326 5.02005 5.15648 5.36702 5.70063 5.84666 6.18689 6.43129 6.61553 6.77895 7.01513 7.06844 7.29804 7.59157 7.81928 8.05119 8.21615 8.62710 9.53071 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.008605 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.907745 B = 3253.014340 C = 4292.635372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.297 3.703 3 C -0.179 4.179 4 C 0.021 3.979 5 C -0.326 4.326 6 C 0.165 3.835 7 O -0.318 6.318 8 C 0.603 3.397 9 F -0.167 7.167 10 F -0.143 7.143 11 F -0.167 7.167 12 C -0.244 4.244 13 C 0.144 3.856 14 C -0.400 4.400 15 H 0.104 0.896 16 C 0.082 3.918 17 N -0.764 5.764 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.281 1.281 21 H -0.236 1.236 22 H 0.114 0.886 23 H 0.115 0.885 24 H 0.123 0.877 25 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.178 6.355 2.302 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.013 4.013 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.346 4.346 6 C 0.123 3.877 7 O -0.238 6.238 8 C 0.512 3.488 9 F -0.149 7.149 10 F -0.125 7.125 11 F -0.149 7.149 12 C -0.263 4.263 13 C 0.138 3.862 14 C -0.426 4.426 15 H 0.122 0.878 16 C -0.144 4.144 17 N -0.384 5.384 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.158 1.158 22 H 0.132 0.868 23 H 0.133 0.867 24 H 0.140 0.860 25 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.492 5.974 2.090 10.591 hybrid contribution 1.208 0.325 -0.283 1.283 sum 9.700 6.299 1.807 11.706 Atomic orbital electron populations 1.81062 1.12529 1.10395 1.13106 1.25532 0.92453 0.91807 0.91542 1.16827 0.83695 0.99560 1.18378 1.20341 0.92560 0.94667 0.92444 1.20436 0.95126 1.01999 1.17028 1.18607 0.76326 0.95844 0.96917 1.86372 1.22955 1.40965 1.73463 1.19365 0.76286 0.77541 0.75621 1.93277 1.90688 1.95955 1.34982 1.93252 1.27302 1.95734 1.96179 1.93276 1.90653 1.49255 1.81746 1.20174 0.93449 0.99860 1.12866 1.18109 0.89258 0.89609 0.89257 1.19707 1.04956 1.07435 1.10463 0.87845 1.26452 0.97412 0.93345 0.97222 1.69587 1.36246 1.09792 1.22749 0.86267 0.79681 0.83019 0.77494 1.18476 1.20788 1.15821 0.86779 0.86705 0.85975 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.38 18.54 41.84 0.78 -10.61 15 2 C 0.30 6.58 14.37 -22.48 -0.32 6.26 15 3 C -0.18 -3.80 5.95 -104.13 -0.62 -4.42 15 4 C 0.02 0.39 9.75 -39.24 -0.38 0.01 15 5 C -0.33 -5.98 8.19 -39.34 -0.32 -6.30 15 6 C 0.17 3.26 6.47 -39.27 -0.25 3.01 15 7 O -0.32 -5.71 10.35 -19.09 -0.20 -5.90 15 8 C 0.60 9.07 3.42 101.05 0.35 9.41 15 9 F -0.17 -2.45 15.52 2.25 0.03 -2.42 15 10 F -0.14 -1.94 17.53 2.25 0.04 -1.90 15 11 F -0.17 -2.47 15.52 2.25 0.03 -2.44 15 12 C -0.24 -5.21 7.10 -38.74 -0.28 -5.49 15 13 C 0.14 3.25 5.27 -104.65 -0.55 2.70 15 14 C -0.40 -9.67 9.03 -37.85 -0.34 -10.01 15 15 H 0.10 2.70 7.66 -52.49 -0.40 2.30 15 16 C 0.08 1.89 5.41 -17.30 -0.09 1.79 15 17 N -0.76 -17.99 13.92 55.56 0.77 -17.22 15 18 Si 0.91 18.28 24.53 -169.99 -4.17 14.11 15 19 H -0.26 -5.03 6.72 56.52 0.38 -4.65 15 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 15 21 H -0.24 -4.83 6.86 56.52 0.39 -4.44 15 22 H 0.11 1.79 8.06 -52.49 -0.42 1.37 15 23 H 0.12 1.89 4.95 -52.49 -0.26 1.63 15 24 H 0.12 2.58 4.76 -52.49 -0.25 2.33 15 25 H 0.30 6.21 8.29 -40.82 -0.34 5.87 15 LS Contribution 245.25 15.07 3.70 3.70 Total: -1.00 -24.02 245.25 -2.33 -26.35 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -0.50 Total: -0.61 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.82 Total: -3.05 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 1.55 Total: -27.82 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.20 Total: -5.90 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.11 Total: -6.76 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -4.17 Total: 14.11 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -24.02 -2.33 -26.35 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396071446.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.639 kcal (2) G-P(sol) polarization free energy of solvation -24.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds