Wall clock time and date at job start Mon Mar 30 2020 06:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39567 * 120.51499 * 209.32878 * 3 2 1 5 5 C 1.37820 * 120.11033 * 179.71752 * 4 3 2 6 6 C 1.39290 * 121.22735 * 0.57180 * 5 4 3 7 7 O 1.35793 * 119.46262 * 179.68787 * 6 5 4 8 8 C 1.42901 * 117.00239 * 0.02612 * 7 6 5 9 9 F 1.39901 * 109.47027 * 59.99897 * 8 7 6 10 10 F 1.39898 * 109.46837 * 179.97438 * 8 7 6 11 11 F 1.39899 * 109.46961 * 299.99749 * 8 7 6 12 12 C 1.38026 * 121.06734 * 359.71497 * 6 5 4 13 13 C 1.40663 * 119.79541 * 359.97438 * 12 6 5 14 14 C 1.40838 * 120.58278 * 179.97438 * 13 12 6 15 15 H 1.07996 * 119.99715 * 150.17863 * 14 13 12 16 16 C 1.40220 * 119.99963 * 330.17688 * 14 13 12 17 17 N 1.30673 * 119.99906 * 161.87437 * 16 14 13 18 18 Si 1.86800 * 120.00441 * 341.87786 * 16 14 13 19 19 H 1.48492 * 109.47451 * 95.38887 * 18 16 14 20 20 H 1.48503 * 109.46983 * 215.39219 * 18 16 14 21 21 H 1.48510 * 109.46913 * 335.38689 * 18 16 14 22 22 H 1.07997 * 119.94833 * 0.02562 * 4 3 2 23 23 H 1.07993 * 119.38678 * 180.26429 * 5 4 3 24 24 H 1.08001 * 120.10064 * 180.02562 * 12 6 5 25 25 H 0.96998 * 119.99961 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2762 1.0492 0.5889 5 6 4.6543 1.0385 0.5893 6 6 5.3685 -0.0012 -0.0017 7 8 6.7261 0.0278 0.0138 8 6 7.3439 1.1480 0.6504 9 9 6.9515 1.1967 1.9924 10 9 8.7349 1.0179 0.5761 11 9 6.9502 2.3259 0.0064 12 6 4.7187 -1.0599 -0.6033 13 6 3.3127 -1.0968 -0.6233 14 6 2.6326 -2.1688 -1.2331 15 1 1.6616 -2.4696 -0.8684 16 6 3.2163 -2.8456 -2.3136 17 7 2.7836 -4.0310 -2.6527 18 14 4.6125 -2.0526 -3.2683 19 1 5.9124 -2.5325 -2.7345 20 1 4.5011 -2.4183 -4.7033 21 1 4.5335 -0.5764 -3.1261 22 1 2.7434 1.8679 1.0496 23 1 5.1905 1.8537 1.0521 24 1 5.2880 -1.8580 -1.0565 25 1 3.1876 -4.4993 -3.3999 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396071446.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:42 Heat of formation + Delta-G solvation = -169.194087 kcal Electronic energy + Delta-G solvation = -18548.351295 eV Core-core repulsion = 14883.178367 eV Total energy + Delta-G solvation = -3665.172928 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.35658 -49.08110 -48.92027 -40.94094 -38.76384 -36.88348 -35.72565 -32.63280 -31.41492 -27.87847 -26.67301 -24.24033 -23.32502 -20.95750 -20.10595 -20.06438 -19.54371 -18.82378 -17.66321 -16.55113 -16.24510 -16.11380 -15.82470 -15.59859 -15.41031 -15.33519 -15.21159 -15.05601 -14.85484 -14.50252 -14.38864 -14.20966 -13.85912 -13.36968 -13.17889 -12.84813 -12.79010 -12.19799 -11.98985 -11.69849 -11.14931 -9.83683 -9.33371 -9.15315 -6.81648 0.04750 0.59691 0.63147 1.27512 1.38734 1.48601 1.90680 1.97060 2.00962 2.10011 2.53782 2.89179 3.05221 3.33425 3.46732 3.88975 4.17461 4.30064 4.58462 4.82314 4.99504 5.19260 5.41283 5.47907 5.62269 5.90773 6.10260 6.35027 6.45744 6.87578 7.89447 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.008605 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.907745 B = 3253.014340 C = 4292.635372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.305 3.695 3 C -0.194 4.194 4 C 0.033 3.967 5 C -0.309 4.309 6 C 0.171 3.829 7 O -0.326 6.326 8 C 0.609 3.391 9 F -0.162 7.162 10 F -0.131 7.131 11 F -0.162 7.162 12 C -0.259 4.259 13 C 0.142 3.858 14 C -0.439 4.439 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.804 5.804 18 Si 0.956 3.044 19 H -0.247 1.247 20 H -0.269 1.269 21 H -0.242 1.242 22 H 0.151 0.849 23 H 0.143 0.857 24 H 0.122 0.878 25 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.215 8.419 2.856 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.005 4.005 3 C -0.199 4.199 4 C 0.012 3.988 5 C -0.329 4.329 6 C 0.128 3.872 7 O -0.246 6.246 8 C 0.518 3.482 9 F -0.144 7.144 10 F -0.113 7.113 11 F -0.144 7.144 12 C -0.278 4.278 13 C 0.136 3.864 14 C -0.465 4.465 15 H 0.084 0.916 16 C -0.167 4.167 17 N -0.426 5.426 18 Si 0.777 3.223 19 H -0.172 1.172 20 H -0.195 1.195 21 H -0.165 1.165 22 H 0.169 0.831 23 H 0.160 0.840 24 H 0.139 0.861 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.537 8.040 2.655 13.517 hybrid contribution 0.667 -0.160 -0.301 0.749 sum 11.204 7.881 2.354 13.898 Atomic orbital electron populations 1.81051 1.13244 1.11233 1.14061 1.25749 0.92702 0.91115 0.90903 1.17043 0.83271 1.00358 1.19273 1.20710 0.92722 0.94403 0.90948 1.20826 0.95140 1.01797 1.15098 1.18633 0.77327 0.95413 0.95803 1.86343 1.21936 1.42482 1.73811 1.19218 0.76555 0.76876 0.75526 1.93294 1.90695 1.95860 1.34516 1.93290 1.26250 1.95618 1.96110 1.93292 1.90660 1.48742 1.81703 1.20152 0.92950 1.00866 1.13849 1.18201 0.90070 0.89331 0.88787 1.19570 1.04302 1.09876 1.12782 0.91561 1.27044 0.99008 0.93422 0.97263 1.69598 1.38061 1.10867 1.24070 0.85606 0.77878 0.81727 0.77105 1.17190 1.19484 1.16456 0.83145 0.83955 0.86059 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.02 18.54 19.00 0.35 -23.66 15 2 C 0.31 13.46 14.37 88.33 1.27 14.73 15 3 C -0.19 -7.99 5.95 -19.55 -0.12 -8.11 15 4 C 0.03 1.10 9.75 22.49 0.22 1.32 15 5 C -0.31 -10.06 8.19 22.42 0.18 -9.88 15 6 C 0.17 6.23 6.47 22.47 0.15 6.37 15 7 O -0.33 -10.60 10.35 -91.23 -0.94 -11.54 15 8 C 0.61 15.91 3.42 113.37 0.39 16.30 15 9 F -0.16 -4.08 15.52 44.97 0.70 -3.38 15 10 F -0.13 -3.09 17.53 44.97 0.79 -2.30 15 11 F -0.16 -4.09 15.52 44.97 0.70 -3.39 15 12 C -0.26 -10.69 7.10 22.81 0.16 -10.53 15 13 C 0.14 6.40 5.27 -19.88 -0.10 6.29 15 14 C -0.44 -22.05 9.03 23.39 0.21 -21.83 15 15 H 0.07 3.71 7.66 -2.91 -0.02 3.69 15 16 C 0.05 2.59 5.41 85.35 0.46 3.05 15 17 N -0.80 -39.22 13.92 21.87 0.30 -38.91 15 18 Si 0.96 37.14 24.53 68.60 1.68 38.82 15 19 H -0.25 -9.03 6.72 99.48 0.67 -8.36 15 20 H -0.27 -9.79 7.11 99.48 0.71 -9.09 15 21 H -0.24 -9.50 6.86 99.48 0.68 -8.82 15 22 H 0.15 3.98 8.06 -2.91 -0.02 3.96 15 23 H 0.14 3.90 4.95 -2.91 -0.01 3.89 15 24 H 0.12 5.00 4.76 -2.91 -0.01 4.98 15 25 H 0.31 13.16 8.29 -92.71 -0.77 12.39 15 Total: -1.00 -51.62 245.25 7.61 -44.01 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.21 Total: 2.65 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 2.82 Total: -2.29 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: 0.66 Total: -62.58 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.94 Total: -11.54 kcal Atomic # 9 Polarization: -11.26 SS G_CDS: 2.18 Total: -9.08 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.68 Total: 38.82 kcal Total: -51.62 7.61 -44.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396071446.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.185 kcal (2) G-P(sol) polarization free energy of solvation -51.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds