Wall clock time and date at job start Mon Mar 30 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47011 * 269.99797 * 3 2 1 5 5 H 1.48500 * 109.47413 * 29.99736 * 3 2 1 6 6 H 1.48506 * 109.47204 * 149.99970 * 3 2 1 7 7 C 1.37877 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.38257 * 120.00351 * 265.23457 * 10 9 7 12 12 C 1.38208 * 119.99870 * 180.27237 * 11 10 9 13 13 N 1.48021 * 119.99653 * 179.72293 * 12 11 10 14 14 O 1.21805 * 120.00134 * 180.02562 * 13 12 11 15 15 O 1.21799 * 120.00438 * 0.02562 * 13 12 11 16 16 C 1.38251 * 120.00336 * 359.74811 * 12 11 10 17 17 C 1.38216 * 120.00125 * 359.97438 * 16 12 11 18 18 C 1.38217 * 119.99893 * 84.99811 * 10 9 7 19 19 C 1.50703 * 119.99908 * 0.02562 * 18 10 9 20 20 F 1.39904 * 109.46969 * 59.72356 * 19 18 10 21 21 F 1.39901 * 109.47086 * 299.72759 * 19 18 10 22 22 H 0.96996 * 119.99586 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47145 * 59.99392 * 9 7 2 24 24 H 1.08994 * 109.46796 * 299.99857 * 9 7 2 25 25 H 1.08006 * 119.99928 * 0.02562 * 11 10 9 26 26 H 1.08007 * 120.00194 * 179.97438 * 16 12 11 27 27 H 1.07995 * 120.00133 * 179.97438 * 17 16 12 28 28 H 1.09002 * 109.47152 * 179.72427 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 6 2.6039 -4.2348 -1.1926 12 6 3.4977 -5.2890 -1.1920 13 7 3.8930 -5.9247 -2.4690 14 8 4.6804 -6.8541 -2.4685 15 8 3.4310 -5.5186 -3.5202 16 6 4.0222 -5.7500 0.0011 17 6 3.6531 -5.1564 1.1935 18 6 2.7586 -4.1021 1.1930 19 6 2.3550 -3.4558 2.4932 20 9 0.9715 -3.5747 2.6633 21 9 2.7073 -2.1020 2.4701 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.1943 -3.8746 -2.1248 26 1 4.7203 -6.5741 0.0016 27 1 4.0624 -5.5168 2.1256 28 1 2.8665 -3.9503 3.3190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396073813.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:26 Heat of formation + Delta-G solvation = -85.901676 kcal Electronic energy + Delta-G solvation = -18957.444620 eV Core-core repulsion = 15419.343827 eV Total energy + Delta-G solvation = -3538.100793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.49176 -46.39944 -41.99676 -39.37067 -36.39730 -33.90104 -32.51622 -31.70797 -27.95800 -27.37090 -24.49268 -23.69629 -22.19914 -20.97735 -18.63082 -18.41569 -17.36667 -17.20536 -16.99422 -16.65293 -16.47984 -14.90504 -14.76670 -14.30593 -13.90073 -13.46947 -12.98730 -12.90839 -12.75263 -12.22905 -12.09904 -11.61209 -11.50950 -11.37367 -11.09511 -10.98416 -10.88635 -10.75215 -10.39536 -9.93812 -9.71632 -9.46268 -8.62209 -8.51866 -6.15602 -4.19097 -0.03126 1.19258 1.50893 1.58180 3.25445 3.31631 3.34565 3.44229 3.93607 4.30958 4.36132 4.58887 4.67085 4.86962 5.08563 5.21510 5.29639 5.42865 5.48307 5.83934 5.87628 5.98570 6.30753 6.45759 6.71195 7.28164 7.36423 7.76623 7.82315 8.06406 8.80892 9.44293 10.94860 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.007547 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.140814 B = 3708.988756 C = 4534.479452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.058 0.942 9 C 0.032 3.968 10 C 0.008 3.992 11 C -0.062 4.062 12 C -0.027 4.027 13 N 0.031 4.969 14 O -0.172 6.172 15 O -0.159 6.159 16 C -0.091 4.091 17 C -0.087 4.087 18 C -0.132 4.132 19 C 0.319 3.681 20 F -0.194 7.194 21 F -0.170 7.170 22 H 0.264 0.736 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.156 0.844 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -9.608 4.661 12.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.076 0.924 9 C -0.005 4.005 10 C 0.007 3.993 11 C -0.081 4.081 12 C -0.110 4.110 13 N 0.549 4.451 14 O -0.386 6.386 15 O -0.376 6.376 16 C -0.110 4.110 17 C -0.106 4.106 18 C -0.134 4.134 19 C 0.265 3.735 20 F -0.175 7.175 21 F -0.151 7.151 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.174 0.826 26 H 0.168 0.832 27 H 0.163 0.837 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.540 -9.157 5.289 11.938 hybrid contribution 0.517 0.817 -0.432 1.059 sum 6.057 -8.340 4.858 11.395 Atomic orbital electron populations 1.69939 1.06026 1.27105 1.49682 1.24912 0.94852 0.99213 0.94776 0.86504 0.79895 0.82972 0.78199 1.20540 1.21043 1.19700 1.20795 0.92766 0.88975 1.51993 0.92409 1.18767 0.92409 0.88703 1.00594 1.20759 0.94722 0.94348 0.89432 1.21124 0.94048 0.91919 1.01053 1.21261 1.05509 1.00762 0.83453 1.43708 0.98715 0.99587 1.03077 1.94484 1.29839 1.20224 1.94025 1.94547 1.56554 1.66468 1.20056 1.20731 0.99856 1.00689 0.89708 1.20845 0.96849 0.95005 0.97879 1.20881 0.98929 0.97327 0.96220 1.20118 0.77877 0.80569 0.94910 1.92997 1.32461 1.95896 1.96146 1.93180 1.91252 1.33337 1.97287 0.92629 0.94335 0.92701 0.82637 0.83223 0.83671 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.59 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 7 C -0.51 -13.29 7.20 -34.44 -0.25 -13.53 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.75 4.46 -29.03 -0.13 0.62 15 10 C 0.01 0.16 5.04 -104.62 -0.53 -0.37 15 11 C -0.06 -1.12 9.19 -39.59 -0.36 -1.48 15 12 C -0.03 -0.44 6.85 -79.95 -0.55 -0.99 15 13 N 0.03 0.52 4.45 33.96 0.15 0.68 15 14 O -0.17 -2.86 18.45 -29.46 -0.54 -3.40 15 15 O -0.16 -2.89 18.45 -29.46 -0.54 -3.43 15 16 C -0.09 -1.20 9.56 -39.58 -0.38 -1.58 15 17 C -0.09 -1.07 9.67 -39.58 -0.38 -1.46 15 18 C -0.13 -2.13 5.37 -104.62 -0.56 -2.69 15 19 C 0.32 5.01 4.97 36.01 0.18 5.18 15 20 F -0.19 -3.49 15.33 2.25 0.03 -3.46 15 21 F -0.17 -3.37 14.95 2.25 0.03 -3.34 15 22 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.04 0.96 8.05 -51.93 -0.42 0.54 15 24 H 0.06 1.38 5.74 -51.93 -0.30 1.08 15 25 H 0.16 2.79 7.61 -52.48 -0.40 2.40 15 26 H 0.15 1.62 7.61 -52.48 -0.40 1.22 15 27 H 0.15 1.15 7.95 -52.49 -0.42 0.74 15 28 H 0.11 1.09 7.88 -51.93 -0.41 0.68 15 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -29.70 264.43 -6.11 -35.81 By element: Atomic # 1 Polarization: -1.81 SS G_CDS: -1.88 Total: -3.69 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -3.06 Total: -14.63 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.89 Total: -23.91 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -1.09 Total: -6.83 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.07 Total: -6.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.70 -6.11 -35.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396073813.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.090 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds