Wall clock time and date at job start Mon Mar 30 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47011 * 269.99797 * 3 2 1 5 5 H 1.48500 * 109.47413 * 29.99736 * 3 2 1 6 6 H 1.48506 * 109.47204 * 149.99970 * 3 2 1 7 7 C 1.37877 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00125 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.38257 * 120.00351 * 265.23457 * 10 9 7 12 12 C 1.38208 * 119.99870 * 180.27237 * 11 10 9 13 13 N 1.48021 * 119.99653 * 179.72293 * 12 11 10 14 14 O 1.21805 * 120.00134 * 180.02562 * 13 12 11 15 15 O 1.21799 * 120.00438 * 0.02562 * 13 12 11 16 16 C 1.38251 * 120.00336 * 359.74811 * 12 11 10 17 17 C 1.38216 * 120.00125 * 359.97438 * 16 12 11 18 18 C 1.38217 * 119.99893 * 84.99811 * 10 9 7 19 19 C 1.50703 * 119.99908 * 0.02562 * 18 10 9 20 20 F 1.39904 * 109.46969 * 59.72356 * 19 18 10 21 21 F 1.39901 * 109.47086 * 299.72759 * 19 18 10 22 22 H 0.96996 * 119.99586 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47145 * 59.99392 * 9 7 2 24 24 H 1.08994 * 109.46796 * 299.99857 * 9 7 2 25 25 H 1.08006 * 119.99928 * 0.02562 * 11 10 9 26 26 H 1.08007 * 120.00194 * 179.97438 * 16 12 11 27 27 H 1.07995 * 120.00133 * 179.97438 * 17 16 12 28 28 H 1.09002 * 109.47152 * 179.72427 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 6 2.6039 -4.2348 -1.1926 12 6 3.4977 -5.2890 -1.1920 13 7 3.8930 -5.9247 -2.4690 14 8 4.6804 -6.8541 -2.4685 15 8 3.4310 -5.5186 -3.5202 16 6 4.0222 -5.7500 0.0011 17 6 3.6531 -5.1564 1.1935 18 6 2.7586 -4.1021 1.1930 19 6 2.3550 -3.4558 2.4932 20 9 0.9715 -3.5747 2.6633 21 9 2.7073 -2.1020 2.4701 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.1943 -3.8746 -2.1248 26 1 4.7203 -6.5741 0.0016 27 1 4.0624 -5.5168 2.1256 28 1 2.8665 -3.9503 3.3190 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396073813.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:26 Heat of formation + Delta-G solvation = -102.473329 kcal Electronic energy + Delta-G solvation = -18958.163221 eV Core-core repulsion = 15419.343827 eV Total energy + Delta-G solvation = -3538.819394 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.80779 -47.76070 -43.32576 -40.64731 -37.73864 -35.68047 -33.90757 -33.25969 -29.52094 -28.82686 -25.94045 -25.29164 -23.51978 -22.37053 -19.93623 -19.79478 -18.71862 -18.55186 -18.43359 -18.24964 -17.96936 -16.62456 -16.17191 -15.59425 -15.03422 -14.95459 -14.58386 -14.35050 -14.13028 -13.88906 -13.58994 -13.25367 -13.10953 -12.76722 -12.66871 -12.49903 -12.39203 -12.34695 -11.90450 -11.69581 -11.54374 -10.68382 -10.60684 -10.05360 -8.23208 -6.32272 -1.33141 0.00000 0.19415 0.29272 1.37839 1.38117 1.48873 2.16040 2.40610 2.77446 3.10845 3.29135 3.38211 3.50633 3.67370 3.90019 4.15252 4.23080 4.25061 4.58815 4.66474 4.74844 4.95795 5.07639 5.26689 5.43234 5.54127 5.68361 6.05112 6.47199 6.74813 7.34310 8.87765 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020536 B = 0.007547 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.140814 B = 3708.988756 C = 4534.479452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.041 3.959 10 C -0.026 4.026 11 C -0.080 4.080 12 C -0.036 4.036 13 N 0.030 4.970 14 O -0.131 6.131 15 O -0.215 6.215 16 C -0.067 4.067 17 C -0.057 4.057 18 C -0.134 4.134 19 C 0.304 3.696 20 F -0.214 7.214 21 F -0.200 7.200 22 H 0.264 0.736 23 H 0.005 0.995 24 H 0.035 0.965 25 H 0.134 0.866 26 H 0.191 0.809 27 H 0.211 0.789 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -11.545 6.778 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.027 4.027 11 C -0.099 4.099 12 C -0.119 4.119 13 N 0.547 4.453 14 O -0.358 6.358 15 O -0.418 6.418 16 C -0.086 4.086 17 C -0.075 4.075 18 C -0.135 4.135 19 C 0.251 3.749 20 F -0.195 7.195 21 F -0.181 7.181 22 H 0.073 0.927 23 H 0.023 0.977 24 H 0.053 0.947 25 H 0.152 0.848 26 H 0.208 0.792 27 H 0.228 0.772 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 8.327 -11.019 7.325 15.633 hybrid contribution -0.261 1.215 -1.012 1.603 sum 8.066 -9.804 6.312 14.178 Atomic orbital electron populations 1.70060 1.07525 1.27808 1.51430 1.25745 0.95598 1.02692 0.94773 0.85570 0.78876 0.79103 0.78320 1.20096 1.20662 1.18874 1.21064 0.92645 0.90328 1.50528 0.92784 1.18401 0.92936 0.90362 0.97927 1.20305 0.96021 0.94639 0.91687 1.20834 0.95617 0.93471 0.99985 1.21371 1.05867 1.00659 0.84013 1.43848 0.98565 0.99537 1.03320 1.94436 1.28231 1.19100 1.93990 1.94581 1.58536 1.67946 1.20756 1.21353 0.98503 1.00440 0.88298 1.21470 0.93950 0.92111 0.99980 1.21155 0.99151 0.98215 0.94982 1.21065 0.77351 0.79437 0.97080 1.92954 1.34458 1.95836 1.96257 1.93106 1.91409 1.36118 1.97511 0.92679 0.97683 0.94707 0.84798 0.79205 0.77226 0.80086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.90 15 2 C 0.01 0.58 5.46 84.65 0.46 1.04 15 3 Si 0.96 44.06 29.54 68.60 2.03 46.09 15 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 15 7 C -0.51 -27.59 7.20 25.60 0.18 -27.41 15 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 15 9 C 0.04 2.04 4.46 29.10 0.13 2.17 15 10 C -0.03 -1.00 5.04 -19.87 -0.10 -1.10 15 11 C -0.08 -2.95 9.19 22.27 0.20 -2.74 15 12 C -0.04 -1.11 6.85 36.37 0.25 -0.87 15 13 N 0.03 1.00 4.45 -46.47 -0.21 0.79 15 14 O -0.13 -3.92 18.45 18.88 0.35 -3.57 15 15 O -0.22 -8.04 18.45 18.89 0.35 -7.69 15 16 C -0.07 -1.42 9.56 22.27 0.21 -1.21 15 17 C -0.06 -1.06 9.67 22.27 0.22 -0.84 15 18 C -0.13 -3.94 5.37 -19.86 -0.11 -4.04 15 19 C 0.30 8.68 4.97 71.24 0.35 9.03 15 20 F -0.21 -7.57 15.33 44.97 0.69 -6.88 15 21 F -0.20 -7.77 14.95 44.97 0.67 -7.09 15 22 H 0.26 14.87 8.31 -92.71 -0.77 14.10 15 23 H 0.00 0.27 8.05 -2.39 -0.02 0.25 15 24 H 0.03 1.86 5.74 -2.39 -0.01 1.85 15 25 H 0.13 5.33 7.61 -2.91 -0.02 5.31 15 26 H 0.19 2.62 7.61 -2.91 -0.02 2.60 15 27 H 0.21 1.29 7.95 -2.91 -0.02 1.27 15 28 H 0.18 2.53 7.88 -2.39 -0.02 2.51 15 Total: -1.00 -70.32 264.43 7.18 -63.14 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: 1.21 Total: -3.92 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 1.81 Total: -25.96 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.08 Total: -54.11 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.70 Total: -11.26 kcal Atomic # 9 Polarization: -15.33 SS G_CDS: 1.36 Total: -13.97 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.32 7.18 -63.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396073813.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.333 kcal (2) G-P(sol) polarization free energy of solvation -70.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds