Wall clock time and date at job start Mon Mar 30 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39094 * 120.00651 * 88.30118 * 3 2 1 5 5 C 1.40500 * 119.70324 * 179.97438 * 4 3 2 6 6 C 1.41451 * 120.14058 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99216 * 154.75367 * 6 5 4 8 8 C 1.39909 * 120.00416 * 334.75587 * 6 5 4 9 9 N 1.30840 * 119.99914 * 342.78434 * 8 6 5 10 10 Si 1.86803 * 120.00108 * 162.78454 * 8 6 5 11 11 H 1.48493 * 109.46896 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47108 * 119.99794 * 10 8 6 13 13 H 1.48499 * 109.47170 * 239.99754 * 10 8 6 14 14 C 1.40694 * 119.71019 * 0.02562 * 5 4 3 15 15 C 1.38190 * 120.00741 * 359.97438 * 14 5 4 16 16 O 1.35909 * 119.85444 * 179.97438 * 15 14 5 17 17 C 1.42897 * 117.00245 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47365 * 60.00439 * 17 16 15 19 19 F 1.39909 * 109.47041 * 180.02562 * 17 16 15 20 20 F 1.39900 * 109.47098 * 300.00194 * 17 16 15 21 21 C 1.38878 * 120.30032 * 0.02562 * 15 14 5 22 22 H 1.08003 * 120.14852 * 0.02562 * 4 3 2 23 23 H 0.97005 * 119.99670 * 180.02562 * 9 8 6 24 24 H 1.08008 * 119.99639 * 179.72455 * 14 5 4 25 25 H 1.08002 * 119.85832 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2636 -0.0348 -1.2040 5 6 4.6686 -0.0334 -1.1966 6 6 5.3853 -0.0686 -2.4155 7 1 6.3880 0.3299 -2.4640 8 6 4.7955 -0.6197 -3.5583 9 7 3.7464 -1.3934 -3.4446 10 14 5.5056 -0.2510 -5.2462 11 1 6.6830 0.6425 -5.1034 12 1 5.9234 -1.5195 -5.8954 13 1 4.4753 0.4166 -6.0817 14 6 5.3594 0.0033 0.0286 15 6 4.6562 0.0382 1.2177 16 8 5.3267 0.0730 2.3994 17 6 4.5393 0.1075 3.5913 18 9 3.7326 -1.0339 3.6505 19 9 5.3830 0.1410 4.7068 20 9 3.7314 1.2497 3.5837 21 6 3.2674 0.0369 1.2108 22 1 2.7261 -0.0624 -2.1404 23 1 3.3377 -1.7757 -4.2370 24 1 6.4394 0.0000 0.0398 25 1 2.7251 0.0647 2.1443 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396079199.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:21 Heat of formation + Delta-G solvation = -157.050595 kcal Electronic energy + Delta-G solvation = -18354.717060 eV Core-core repulsion = 14690.070713 eV Total energy + Delta-G solvation = -3664.646347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.05400 -47.81790 -47.61442 -39.27385 -37.20504 -35.65566 -33.77413 -30.61497 -29.35503 -25.92973 -25.32412 -22.81930 -21.70301 -19.67548 -18.74214 -18.63844 -17.59419 -16.59491 -15.48547 -15.16535 -14.83235 -14.72673 -14.50683 -14.33769 -14.11660 -13.93135 -13.75455 -13.70622 -13.15672 -13.00105 -12.86528 -12.38940 -11.96623 -11.84059 -11.38748 -11.19594 -10.81154 -10.62943 -10.42671 -10.06432 -9.48070 -7.99231 -7.61221 -7.13838 -4.78142 1.83549 2.03078 2.37940 2.88531 2.93468 2.98411 3.29163 3.40199 3.68707 3.72487 4.23118 4.32560 4.42984 4.73425 5.21443 5.81474 5.89961 6.25314 6.48518 6.70937 6.81720 6.96696 7.14932 7.39169 7.55282 7.78197 8.07456 8.22748 8.39489 8.45210 9.80636 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.006426 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.657530 B = 4355.995443 C = 5181.188483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.282 3.718 3 C 0.008 3.992 4 C -0.115 4.115 5 C 0.129 3.871 6 C -0.441 4.441 7 H 0.091 0.909 8 C 0.073 3.927 9 N -0.779 5.779 10 Si 0.917 3.083 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.269 1.269 14 C -0.209 4.209 15 C 0.127 3.873 16 O -0.315 6.315 17 C 0.601 3.399 18 F -0.169 7.169 19 F -0.145 7.145 20 F -0.170 7.170 21 C -0.275 4.275 22 H 0.134 0.866 23 H 0.289 0.711 24 H 0.116 0.884 25 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 1.746 5.273 6.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.032 4.032 3 C 0.004 3.996 4 C -0.137 4.137 5 C 0.125 3.875 6 C -0.469 4.469 7 H 0.109 0.891 8 C -0.147 4.147 9 N -0.403 5.403 10 Si 0.740 3.260 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.194 1.194 14 C -0.230 4.230 15 C 0.086 3.914 16 O -0.235 6.235 17 C 0.510 3.490 18 F -0.151 7.151 19 F -0.127 7.127 20 F -0.152 7.152 21 C -0.297 4.297 22 H 0.152 0.848 23 H 0.100 0.900 24 H 0.134 0.866 25 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.969 1.588 5.188 5.771 hybrid contribution 0.421 -0.017 -0.378 0.566 sum 2.389 1.571 4.809 5.595 Atomic orbital electron populations 1.81079 1.12481 1.11057 1.09365 1.26096 0.93053 0.92175 0.91897 1.15519 0.82998 1.06471 0.94568 1.21559 0.94534 1.02280 0.95348 1.17213 0.90940 0.87861 0.91441 1.19696 1.01870 1.33100 0.92221 0.89083 1.26035 0.94206 0.92352 1.02138 1.69777 1.17627 1.19949 1.32908 0.86099 0.80231 0.79513 0.80146 1.17966 1.19646 1.19384 1.20412 0.98970 1.15425 0.88198 1.18237 0.90282 1.01505 0.81409 1.86381 1.35065 1.89648 1.12429 1.19412 0.74944 0.74670 0.79986 1.93276 1.73921 1.51678 1.96224 1.93243 1.72213 1.96366 1.50831 1.93271 1.73886 1.51717 1.96287 1.20456 0.91623 1.20551 0.97097 0.84830 0.90005 0.86551 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.09 18.54 41.84 0.78 -9.32 15 2 C 0.28 6.00 15.32 -22.47 -0.34 5.66 15 3 C 0.01 0.18 5.72 -107.04 -0.61 -0.43 15 4 C -0.11 -2.61 8.38 -38.41 -0.32 -2.93 15 5 C 0.13 2.94 5.56 -106.89 -0.59 2.34 15 6 C -0.44 -9.93 9.05 -37.73 -0.34 -10.27 15 7 H 0.09 1.94 7.90 -52.48 -0.41 1.52 15 8 C 0.07 1.59 5.14 -17.35 -0.09 1.50 15 9 N -0.78 -17.70 10.97 55.54 0.61 -17.09 15 10 Si 0.92 16.30 29.59 -169.99 -5.03 11.27 15 11 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15 12 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 13 H -0.27 -4.78 7.11 56.52 0.40 -4.38 15 14 C -0.21 -4.46 9.71 -38.67 -0.38 -4.83 15 15 C 0.13 2.59 6.47 -39.36 -0.25 2.34 15 16 O -0.31 -5.80 10.37 -19.45 -0.20 -6.00 15 17 C 0.60 9.72 3.42 101.05 0.35 10.06 15 18 F -0.17 -2.78 15.55 2.25 0.04 -2.75 15 19 F -0.14 -2.08 17.53 2.25 0.04 -2.04 15 20 F -0.17 -2.75 15.55 2.25 0.04 -2.71 15 21 C -0.28 -5.65 7.96 -38.73 -0.31 -5.96 15 22 H 0.13 3.14 6.18 -52.48 -0.32 2.81 15 23 H 0.29 5.96 8.30 -40.82 -0.34 5.62 15 24 H 0.12 2.31 8.06 -52.48 -0.42 1.88 15 25 H 0.11 2.14 5.05 -52.49 -0.27 1.88 15 LS Contribution 251.64 15.07 3.79 3.79 Total: -1.00 -23.14 251.64 -3.40 -26.54 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -0.56 Total: 0.83 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.90 Total: -2.53 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 1.38 Total: -26.40 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.20 Total: -6.00 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.11 Total: -7.50 kcal Atomic # 14 Polarization: 16.30 SS G_CDS: -5.03 Total: 11.27 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -23.14 -3.40 -26.54 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396079199.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.507 kcal (2) G-P(sol) polarization free energy of solvation -23.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds