Wall clock time and date at job start Mon Mar 30 2020 06:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39094 * 120.00651 * 88.30118 * 3 2 1 5 5 C 1.40500 * 119.70324 * 179.97438 * 4 3 2 6 6 C 1.41451 * 120.14058 * 180.02562 * 5 4 3 7 7 H 1.08006 * 119.99216 * 154.75367 * 6 5 4 8 8 C 1.39909 * 120.00416 * 334.75587 * 6 5 4 9 9 N 1.30840 * 119.99914 * 342.78434 * 8 6 5 10 10 Si 1.86803 * 120.00108 * 162.78454 * 8 6 5 11 11 H 1.48493 * 109.46896 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47108 * 119.99794 * 10 8 6 13 13 H 1.48499 * 109.47170 * 239.99754 * 10 8 6 14 14 C 1.40694 * 119.71019 * 0.02562 * 5 4 3 15 15 C 1.38190 * 120.00741 * 359.97438 * 14 5 4 16 16 O 1.35909 * 119.85444 * 179.97438 * 15 14 5 17 17 C 1.42897 * 117.00245 * 180.02562 * 16 15 14 18 18 F 1.39895 * 109.47365 * 60.00439 * 17 16 15 19 19 F 1.39909 * 109.47041 * 180.02562 * 17 16 15 20 20 F 1.39900 * 109.47098 * 300.00194 * 17 16 15 21 21 C 1.38878 * 120.30032 * 0.02562 * 15 14 5 22 22 H 1.08003 * 120.14852 * 0.02562 * 4 3 2 23 23 H 0.97005 * 119.99670 * 180.02562 * 9 8 6 24 24 H 1.08008 * 119.99639 * 179.72455 * 14 5 4 25 25 H 1.08002 * 119.85832 * 180.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2636 -0.0348 -1.2040 5 6 4.6686 -0.0334 -1.1966 6 6 5.3853 -0.0686 -2.4155 7 1 6.3880 0.3299 -2.4640 8 6 4.7955 -0.6197 -3.5583 9 7 3.7464 -1.3934 -3.4446 10 14 5.5056 -0.2510 -5.2462 11 1 6.6830 0.6425 -5.1034 12 1 5.9234 -1.5195 -5.8954 13 1 4.4753 0.4166 -6.0817 14 6 5.3594 0.0033 0.0286 15 6 4.6562 0.0382 1.2177 16 8 5.3267 0.0730 2.3994 17 6 4.5393 0.1075 3.5913 18 9 3.7326 -1.0339 3.6505 19 9 5.3830 0.1410 4.7068 20 9 3.7314 1.2497 3.5837 21 6 3.2674 0.0369 1.2108 22 1 2.7261 -0.0624 -2.1404 23 1 3.3377 -1.7757 -4.2370 24 1 6.4394 0.0000 0.0398 25 1 2.7251 0.0647 2.1443 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396079199.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:20 Heat of formation + Delta-G solvation = -167.467746 kcal Electronic energy + Delta-G solvation = -18355.168782 eV Core-core repulsion = 14690.070713 eV Total energy + Delta-G solvation = -3665.098068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.35551 -49.07880 -48.93852 -40.85464 -38.83099 -37.36886 -35.42937 -32.30979 -31.00135 -27.57544 -26.75747 -24.50750 -23.27257 -21.22254 -20.06316 -20.01852 -19.10532 -18.29169 -17.11205 -16.70643 -16.38483 -16.09405 -15.98187 -15.72122 -15.41376 -15.32463 -15.13935 -15.08082 -14.69505 -14.67801 -14.37642 -14.07749 -13.65026 -13.43458 -12.86949 -12.83169 -12.33596 -12.32206 -11.99569 -11.67722 -11.09941 -9.69377 -9.28186 -8.76840 -6.49843 0.12672 0.64126 0.71977 1.45131 1.48962 1.62289 1.63133 1.94986 2.04116 2.22256 2.68819 2.88354 3.05066 3.06326 3.51469 4.17549 4.29702 4.57322 4.79811 5.05726 5.15553 5.29380 5.47880 5.67747 5.86071 6.12730 6.36573 6.51470 6.70484 6.76543 8.20236 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.006426 C = 0.005403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.657530 B = 4355.995443 C = 5181.188483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.289 3.711 3 C 0.008 3.992 4 C -0.131 4.131 5 C 0.110 3.890 6 C -0.464 4.464 7 H 0.098 0.902 8 C 0.039 3.961 9 N -0.811 5.811 10 Si 0.985 3.015 11 H -0.251 1.251 12 H -0.268 1.268 13 H -0.268 1.268 14 C -0.214 4.214 15 C 0.132 3.868 16 O -0.317 6.317 17 C 0.606 3.394 18 F -0.169 7.169 19 F -0.130 7.130 20 F -0.168 7.168 21 C -0.273 4.273 22 H 0.121 0.879 23 H 0.295 0.705 24 H 0.128 0.872 25 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 1.977 5.427 7.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.025 4.025 3 C 0.004 3.996 4 C -0.153 4.153 5 C 0.107 3.893 6 C -0.492 4.492 7 H 0.116 0.884 8 C -0.179 4.179 9 N -0.435 5.435 10 Si 0.805 3.195 11 H -0.174 1.174 12 H -0.193 1.193 13 H -0.193 1.193 14 C -0.235 4.235 15 C 0.090 3.910 16 O -0.237 6.237 17 C 0.515 3.485 18 F -0.151 7.151 19 F -0.112 7.112 20 F -0.150 7.150 21 C -0.295 4.295 22 H 0.138 0.862 23 H 0.106 0.894 24 H 0.146 0.854 25 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.620 1.820 5.370 6.246 hybrid contribution 0.220 -0.098 -0.305 0.389 sum 2.840 1.723 5.064 6.056 Atomic orbital electron populations 1.81078 1.12613 1.11338 1.09678 1.26039 0.92932 0.91913 0.91603 1.15545 0.83012 1.06371 0.94652 1.21460 0.94744 1.03891 0.95236 1.17470 0.91185 0.88317 0.92369 1.19987 1.02480 1.33867 0.92876 0.88380 1.26808 0.94254 0.91575 1.05235 1.69820 1.18774 1.20711 1.34177 0.85086 0.79504 0.79288 0.75601 1.17361 1.19312 1.19317 1.20556 0.99652 1.15089 0.88190 1.18178 0.90170 1.00599 0.82024 1.86354 1.35425 1.89494 1.12474 1.19287 0.74954 0.74623 0.79607 1.93280 1.73912 1.51729 1.96182 1.93282 1.71803 1.96295 1.49783 1.93279 1.73816 1.51615 1.96248 1.20609 0.91862 1.19814 0.97188 0.86151 0.89394 0.85388 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.13 18.54 19.00 0.35 -19.78 15 2 C 0.29 12.15 15.32 88.33 1.35 13.50 15 3 C 0.01 0.34 5.72 -21.43 -0.12 0.22 15 4 C -0.13 -6.00 8.38 23.03 0.19 -5.80 15 5 C 0.11 5.02 5.56 -21.34 -0.12 4.90 15 6 C -0.46 -20.85 9.05 23.47 0.21 -20.64 15 7 H 0.10 4.12 7.90 -2.91 -0.02 4.10 15 8 C 0.04 1.68 5.14 85.25 0.44 2.12 15 9 N -0.81 -37.01 10.97 21.82 0.24 -36.77 15 10 Si 0.98 32.77 29.59 68.60 2.03 34.80 15 11 H -0.25 -8.02 7.11 99.48 0.71 -7.32 15 12 H -0.27 -8.74 7.11 99.48 0.71 -8.03 15 13 H -0.27 -8.84 7.11 99.48 0.71 -8.13 15 14 C -0.21 -8.97 9.71 22.86 0.22 -8.75 15 15 C 0.13 5.22 6.47 22.41 0.14 5.37 15 16 O -0.32 -11.09 10.37 -92.53 -0.96 -12.05 15 17 C 0.61 18.30 3.42 113.37 0.39 18.68 15 18 F -0.17 -5.22 15.55 44.97 0.70 -4.52 15 19 F -0.13 -3.43 17.53 44.97 0.79 -2.64 15 20 F -0.17 -5.07 15.55 44.97 0.70 -4.37 15 21 C -0.27 -10.88 7.96 22.82 0.18 -10.69 15 22 H 0.12 5.79 6.18 -2.91 -0.02 5.77 15 23 H 0.30 12.21 8.30 -92.70 -0.77 11.44 15 24 H 0.13 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.12 4.57 5.05 -2.91 -0.01 4.55 15 Total: -1.00 -47.14 251.64 8.01 -39.13 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.27 Total: 7.31 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 2.89 Total: -1.10 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.59 Total: -56.55 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.96 Total: -12.05 kcal Atomic # 9 Polarization: -13.72 SS G_CDS: 2.19 Total: -11.53 kcal Atomic # 14 Polarization: 32.77 SS G_CDS: 2.03 Total: 34.80 kcal Total: -47.14 8.01 -39.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396079199.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.341 kcal (2) G-P(sol) polarization free energy of solvation -47.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds