Wall clock time and date at job start Mon Mar 30 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39034 * 120.14076 * 26.21891 * 3 2 1 5 5 C 1.40492 * 119.53614 * 180.31851 * 4 3 2 6 6 C 1.41276 * 120.10354 * 179.97438 * 5 4 3 7 7 H 1.07995 * 120.00172 * 150.14927 * 6 5 4 8 8 C 1.39868 * 119.99408 * 330.14879 * 6 5 4 9 9 N 1.30891 * 119.99921 * 161.69979 * 8 6 5 10 10 Si 1.86803 * 120.00570 * 341.69760 * 8 6 5 11 11 H 1.48500 * 109.47198 * 95.41285 * 10 8 6 12 12 H 1.48493 * 109.47459 * 215.41539 * 10 8 6 13 13 H 1.48507 * 109.46865 * 335.41763 * 10 8 6 14 14 C 1.40960 * 119.80079 * 359.95438 * 5 4 3 15 15 C 1.36363 * 120.27720 * 0.02562 * 14 5 4 16 16 C 1.39178 * 120.47505 * 359.97438 * 15 14 5 17 17 O 1.35503 * 119.90212 * 179.97438 * 16 15 14 18 18 C 1.42894 * 117.00230 * 0.02562 * 17 16 15 19 19 F 1.39902 * 109.47314 * 59.99773 * 18 17 16 20 20 F 1.39905 * 109.47505 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.47335 * 299.99970 * 18 17 16 22 22 H 1.08000 * 120.23576 * 0.24807 * 4 3 2 23 23 H 0.96999 * 120.00287 * 179.97438 * 9 8 6 24 24 H 1.07996 * 119.85911 * 179.97438 * 14 5 4 25 25 H 1.07997 * 119.75626 * 179.97438 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2666 -1.0777 -0.5312 5 6 4.6715 -1.0668 -0.5186 6 6 5.3934 -2.1564 -1.0546 7 1 6.3687 -1.9963 -1.4898 8 6 4.8448 -3.4426 -1.0217 9 7 5.3159 -4.3754 -1.8099 10 14 3.4399 -3.8294 0.1470 11 1 2.1469 -3.6898 -0.5698 12 1 3.5808 -5.2203 0.6474 13 1 3.4750 -2.8852 1.2928 14 6 5.3586 0.0349 0.0303 15 6 4.6655 1.0886 0.5488 16 6 3.2737 1.0898 0.5422 17 8 2.5967 2.1427 1.0610 18 6 3.3753 3.2146 1.5962 19 9 4.1873 3.7489 0.5899 20 9 2.5236 4.2109 2.0854 21 9 4.1776 2.7341 2.6367 22 1 2.7332 -1.9184 -0.9496 23 1 4.9358 -5.2675 -1.7869 24 1 6.4384 0.0441 0.0408 25 1 5.2004 1.9281 0.9675 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396079989.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:37 Heat of formation + Delta-G solvation = -163.054701 kcal Electronic energy + Delta-G solvation = -18558.307857 eV Core-core repulsion = 14893.401153 eV Total energy + Delta-G solvation = -3664.906704 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.36879 -49.10081 -48.93559 -41.09945 -38.79624 -37.56321 -35.42526 -32.45308 -32.05110 -27.76056 -26.16407 -24.76775 -23.39365 -20.82783 -20.71015 -20.07812 -19.36677 -18.52027 -17.46671 -17.05500 -16.28765 -16.19190 -15.85895 -15.61224 -15.51094 -15.38717 -15.11369 -15.07445 -14.70596 -14.65978 -14.53751 -14.17729 -14.13348 -13.70464 -13.47360 -12.75747 -12.55983 -12.22527 -12.04849 -11.69446 -11.11134 -9.92183 -9.47077 -8.96178 -6.53007 -0.09594 0.47803 0.61011 1.25839 1.35689 1.47447 1.53856 1.90554 1.93520 2.06649 2.51828 2.85367 2.87772 3.04857 3.32793 3.90314 4.00793 4.48811 4.59507 4.68389 4.96733 5.23032 5.36665 5.52571 5.70827 5.95705 6.20903 6.37744 6.50503 6.70802 8.10072 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.029075 B = 0.007214 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.809709 B = 3880.249442 C = 4472.726299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.281 3.719 3 C 0.002 3.998 4 C -0.182 4.182 5 C 0.067 3.933 6 C -0.455 4.455 7 H 0.082 0.918 8 C 0.059 3.941 9 N -0.828 5.828 10 Si 0.933 3.067 11 H -0.267 1.267 12 H -0.273 1.273 13 H -0.240 1.240 14 C -0.130 4.130 15 C -0.136 4.136 16 C 0.019 3.981 17 O -0.324 6.324 18 C 0.609 3.391 19 F -0.163 7.163 20 F -0.134 7.134 21 F -0.163 7.163 22 H 0.117 0.883 23 H 0.297 0.703 24 H 0.141 0.859 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 9.545 6.096 11.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.033 4.033 3 C -0.002 4.002 4 C -0.204 4.204 5 C 0.064 3.936 6 C -0.483 4.483 7 H 0.100 0.900 8 C -0.159 4.159 9 N -0.453 5.453 10 Si 0.757 3.243 11 H -0.193 1.193 12 H -0.199 1.199 13 H -0.163 1.163 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.026 4.026 17 O -0.245 6.245 18 C 0.518 3.482 19 F -0.145 7.145 20 F -0.115 7.115 21 F -0.145 7.145 22 H 0.134 0.866 23 H 0.108 0.892 24 H 0.159 0.841 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.465 9.329 5.995 11.185 hybrid contribution 0.114 -0.318 0.219 0.402 sum -1.351 9.011 6.213 11.028 Atomic orbital electron populations 1.81086 1.12504 1.09353 1.10510 1.25846 0.92843 0.92226 0.92379 1.14995 0.83023 0.95531 1.06621 1.20967 0.94535 0.97540 1.07372 1.17713 0.90657 0.94250 0.90939 1.19476 1.04632 0.91232 1.33000 0.90008 1.26637 0.98202 0.96006 0.95039 1.69709 1.39563 1.05192 1.30820 0.85942 0.78563 0.78698 0.81138 1.19251 1.19926 1.16313 1.21099 1.00488 0.93763 0.99636 1.20976 0.90433 1.00965 1.03102 1.18103 0.90827 0.87010 1.06627 1.86183 1.35737 1.27803 1.74768 1.19204 0.74845 0.78375 0.75763 1.93291 1.73345 1.86748 1.61123 1.93282 1.71568 1.59259 1.87411 1.93292 1.73879 1.87982 1.59389 0.86582 0.89209 0.84088 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.79 18.54 19.01 0.35 -18.44 15 2 C 0.28 11.21 14.86 88.33 1.31 12.52 15 3 C 0.00 0.09 5.74 -21.25 -0.12 -0.03 15 4 C -0.18 -7.58 6.87 23.01 0.16 -7.42 15 5 C 0.07 2.84 5.10 -21.32 -0.11 2.73 15 6 C -0.46 -21.27 9.55 23.41 0.22 -21.05 15 7 H 0.08 4.02 8.06 -2.91 -0.02 3.99 15 8 C 0.06 2.76 5.40 85.23 0.46 3.22 15 9 N -0.83 -40.27 13.93 21.82 0.30 -39.96 15 10 Si 0.93 37.78 24.52 68.60 1.68 39.46 15 11 H -0.27 -10.73 6.70 99.48 0.67 -10.06 15 12 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 13 H -0.24 -9.67 6.87 99.48 0.68 -8.99 15 14 C -0.13 -4.67 9.72 22.50 0.22 -4.45 15 15 C -0.14 -4.48 8.16 22.06 0.18 -4.30 15 16 C 0.02 0.68 6.51 23.08 0.15 0.83 15 17 O -0.32 -10.76 9.78 -88.05 -0.86 -11.62 15 18 C 0.61 16.41 3.42 113.37 0.39 16.79 15 19 F -0.16 -4.19 15.54 44.97 0.70 -3.49 15 20 F -0.13 -3.34 17.53 44.97 0.79 -2.55 15 21 F -0.16 -4.22 15.54 44.97 0.70 -3.52 15 22 H 0.12 4.93 4.73 -2.91 -0.01 4.92 15 23 H 0.30 13.09 8.30 -92.71 -0.77 12.32 15 24 H 0.14 4.46 8.06 -2.91 -0.02 4.43 15 25 H 0.15 4.01 5.05 -2.91 -0.01 4.00 15 Total: -1.00 -48.23 245.60 7.74 -40.49 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.21 Total: 0.77 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 2.86 Total: -1.14 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.66 Total: -58.40 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -0.86 Total: -11.62 kcal Atomic # 9 Polarization: -11.75 SS G_CDS: 2.19 Total: -9.57 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.68 Total: 39.46 kcal Total: -48.23 7.74 -40.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396079989.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.564 kcal (2) G-P(sol) polarization free energy of solvation -48.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds