Wall clock time and date at job start Mon Mar 30 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.46544 * 120.60740 * 231.39002 * 3 2 1 5 5 C 1.40785 * 120.58119 * 0.02562 * 4 3 2 6 6 H 1.07998 * 120.00107 * 334.74518 * 5 4 3 7 7 C 1.40249 * 119.99576 * 154.46208 * 5 4 3 8 8 N 1.30650 * 120.00366 * 343.33484 * 7 5 4 9 9 Si 1.86800 * 119.99754 * 163.32810 * 7 5 4 10 10 H 1.48501 * 109.47326 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47043 * 120.00093 * 9 7 5 12 12 H 1.48500 * 109.47281 * 240.00144 * 9 7 5 13 13 C 1.40754 * 118.83370 * 179.75254 * 4 3 2 14 14 C 1.37590 * 119.98116 * 0.24463 * 13 4 3 15 15 C 1.38457 * 121.27448 * 0.02562 * 14 13 4 16 16 C 1.38769 * 121.22487 * 0.02562 * 15 14 13 17 17 O 1.35701 * 120.05014 * 179.97438 * 16 15 14 18 18 C 1.42899 * 116.99581 * 359.97438 * 17 16 15 19 19 F 1.39897 * 109.47058 * 60.00542 * 18 17 16 20 20 F 1.39908 * 109.46619 * 179.97438 * 18 17 16 21 21 F 1.39901 * 109.47681 * 299.99916 * 18 17 16 22 22 H 0.97001 * 120.00520 * 179.97438 * 8 7 5 23 23 H 1.07994 * 120.01124 * 180.22862 * 13 4 3 24 24 H 1.07995 * 119.36037 * 180.02562 * 14 13 4 25 25 H 1.07998 * 119.38702 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3137 0.7880 0.9856 5 6 2.6349 1.5571 1.9498 6 1 1.6332 1.9090 1.7523 7 6 3.2574 1.8610 3.1693 8 7 4.3061 1.1836 3.5542 9 14 2.5870 3.2346 4.2432 10 1 1.4014 3.8422 3.5871 11 1 2.1924 2.6825 5.5641 12 1 3.6338 4.2708 4.4325 13 6 4.7206 0.7573 0.9549 14 6 5.3713 0.0010 0.0074 15 6 4.6686 -0.7392 -0.9282 16 6 3.2810 -0.7454 -0.9456 17 8 2.6164 -1.4792 -1.8737 18 6 3.4088 -2.2211 -2.8030 19 9 4.2116 -3.1320 -2.1082 20 9 2.5696 -2.9152 -3.6814 21 9 4.2206 -1.3430 -3.5291 22 1 4.7369 1.3941 4.3974 23 1 5.2892 1.3274 1.6746 24 1 6.4510 -0.0156 -0.0068 25 1 5.2104 -1.3218 -1.6585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396080511.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:50 Heat of formation + Delta-G solvation = -157.476684 kcal Electronic energy + Delta-G solvation = -18508.265433 eV Core-core repulsion = 14843.600610 eV Total energy + Delta-G solvation = -3664.664823 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.05914 -47.81578 -47.61873 -39.25536 -36.85083 -35.14140 -33.97373 -30.35835 -29.42137 -26.02653 -25.39698 -22.47649 -21.64060 -19.38767 -18.88109 -18.75343 -17.40046 -17.02432 -15.57365 -15.34491 -14.74575 -14.70543 -14.35090 -14.15417 -14.11585 -13.96516 -13.73091 -13.60723 -13.12208 -12.81336 -12.42761 -12.20299 -11.86349 -11.71337 -11.33713 -11.31063 -10.80762 -10.59116 -10.32271 -9.99462 -9.60020 -7.87349 -7.61187 -7.29337 -4.91958 1.97813 2.01121 2.40283 2.86025 2.90374 2.93793 3.29530 3.61100 3.86651 4.02776 4.22643 4.30997 4.41468 5.18911 5.28017 5.64135 6.01863 6.23685 6.48316 6.61361 6.71260 7.11829 7.14049 7.46356 7.57571 7.74676 8.08001 8.26733 8.36107 8.76107 9.60616 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.006361 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.657462 B = 4400.735371 C = 4973.714238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.303 3.697 3 C -0.186 4.186 4 C 0.169 3.831 5 C -0.419 4.419 6 H 0.091 0.909 7 C 0.075 3.925 8 N -0.755 5.755 9 Si 0.919 3.081 10 H -0.254 1.254 11 H -0.268 1.268 12 H -0.265 1.265 13 C -0.176 4.176 14 C -0.047 4.047 15 C -0.315 4.315 16 C 0.179 3.821 17 O -0.317 6.317 18 C 0.603 3.397 19 F -0.167 7.167 20 F -0.144 7.144 21 F -0.168 7.168 22 H 0.293 0.707 23 H 0.131 0.869 24 H 0.104 0.896 25 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -1.718 -4.382 6.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.007 4.007 3 C -0.192 4.192 4 C 0.164 3.836 5 C -0.445 4.445 6 H 0.109 0.891 7 C -0.149 4.149 8 N -0.377 5.377 9 Si 0.742 3.258 10 H -0.177 1.177 11 H -0.193 1.193 12 H -0.189 1.189 13 C -0.195 4.195 14 C -0.067 4.067 15 C -0.335 4.335 16 C 0.135 3.865 17 O -0.236 6.236 18 C 0.512 3.488 19 F -0.149 7.149 20 F -0.125 7.125 21 F -0.150 7.150 22 H 0.104 0.896 23 H 0.149 0.851 24 H 0.122 0.878 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.824 -1.799 -4.228 5.393 hybrid contribution 0.531 0.224 0.264 0.634 sum 3.355 -1.575 -3.963 5.427 Atomic orbital electron populations 1.81004 1.12453 1.12516 1.11680 1.25352 0.92336 0.91606 0.91433 1.16166 0.83662 1.12760 1.06643 1.18222 0.91385 0.86412 0.87622 1.19841 1.01978 1.24681 0.98019 0.89107 1.26152 0.93946 0.96262 0.98537 1.69714 1.15676 1.31920 1.20348 0.86034 0.80499 0.80038 0.79228 1.17728 1.19267 1.18921 1.21303 0.93642 1.04006 1.00588 1.20453 0.98133 0.94668 0.93420 1.20452 0.90588 1.14135 1.08358 1.18376 0.90852 0.90716 0.86559 1.86359 1.35500 1.59552 1.42228 1.19361 0.74893 0.76694 0.77806 1.93274 1.74050 1.68321 1.79278 1.93250 1.72511 1.78695 1.68083 1.93269 1.73571 1.69424 1.78715 0.89556 0.85107 0.87796 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.29 18.54 41.84 0.78 -11.51 15 2 C 0.30 7.34 13.86 -22.47 -0.31 7.03 15 3 C -0.19 -4.36 5.96 -103.97 -0.62 -4.98 15 4 C 0.17 4.01 5.73 -104.64 -0.60 3.41 15 5 C -0.42 -9.87 8.57 -37.86 -0.32 -10.20 15 6 H 0.09 2.17 7.40 -52.49 -0.39 1.78 15 7 C 0.08 1.63 5.17 -17.30 -0.09 1.54 15 8 N -0.76 -16.46 10.95 55.56 0.61 -15.85 15 9 Si 0.92 16.39 29.59 -169.99 -5.03 11.36 15 10 H -0.25 -4.65 7.11 56.52 0.40 -4.25 15 11 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 12 H -0.26 -4.54 7.11 56.52 0.40 -4.13 15 13 C -0.18 -3.87 8.69 -38.87 -0.34 -4.21 15 14 C -0.05 -0.94 9.96 -39.74 -0.40 -1.34 15 15 C -0.32 -6.32 8.24 -39.30 -0.32 -6.64 15 16 C 0.18 3.88 6.49 -38.74 -0.25 3.62 15 17 O -0.32 -6.40 9.82 -18.81 -0.18 -6.59 15 18 C 0.60 10.14 3.42 101.05 0.35 10.48 15 19 F -0.17 -2.74 15.55 2.25 0.04 -2.71 15 20 F -0.14 -2.21 17.53 2.25 0.04 -2.17 15 21 F -0.17 -2.71 15.55 2.25 0.04 -2.67 15 22 H 0.29 5.65 8.29 -40.82 -0.34 5.31 15 23 H 0.13 2.87 6.19 -52.49 -0.33 2.54 15 24 H 0.10 1.76 8.06 -52.49 -0.42 1.34 15 25 H 0.11 1.98 5.02 -52.49 -0.26 1.71 15 LS Contribution 249.91 15.07 3.77 3.77 Total: -1.00 -24.30 249.91 -3.40 -27.69 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -0.53 Total: -0.03 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.91 Total: -1.29 kcal Atomic # 7 Polarization: -28.75 SS G_CDS: 1.38 Total: -27.36 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.18 Total: -6.59 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.11 Total: -7.55 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -24.30 -3.40 -27.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396080511.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.784 kcal (2) G-P(sol) polarization free energy of solvation -24.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds