Wall clock time and date at job start Mon Mar 30 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.46544 * 120.60740 * 231.39002 * 3 2 1 5 5 C 1.40785 * 120.58119 * 0.02562 * 4 3 2 6 6 H 1.07998 * 120.00107 * 334.74518 * 5 4 3 7 7 C 1.40249 * 119.99576 * 154.46208 * 5 4 3 8 8 N 1.30650 * 120.00366 * 343.33484 * 7 5 4 9 9 Si 1.86800 * 119.99754 * 163.32810 * 7 5 4 10 10 H 1.48501 * 109.47326 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47043 * 120.00093 * 9 7 5 12 12 H 1.48500 * 109.47281 * 240.00144 * 9 7 5 13 13 C 1.40754 * 118.83370 * 179.75254 * 4 3 2 14 14 C 1.37590 * 119.98116 * 0.24463 * 13 4 3 15 15 C 1.38457 * 121.27448 * 0.02562 * 14 13 4 16 16 C 1.38769 * 121.22487 * 0.02562 * 15 14 13 17 17 O 1.35701 * 120.05014 * 179.97438 * 16 15 14 18 18 C 1.42899 * 116.99581 * 359.97438 * 17 16 15 19 19 F 1.39897 * 109.47058 * 60.00542 * 18 17 16 20 20 F 1.39908 * 109.46619 * 179.97438 * 18 17 16 21 21 F 1.39901 * 109.47681 * 299.99916 * 18 17 16 22 22 H 0.97001 * 120.00520 * 179.97438 * 8 7 5 23 23 H 1.07994 * 120.01124 * 180.22862 * 13 4 3 24 24 H 1.07995 * 119.36037 * 180.02562 * 14 13 4 25 25 H 1.07998 * 119.38702 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3137 0.7880 0.9856 5 6 2.6349 1.5571 1.9498 6 1 1.6332 1.9090 1.7523 7 6 3.2574 1.8610 3.1693 8 7 4.3061 1.1836 3.5542 9 14 2.5870 3.2346 4.2432 10 1 1.4014 3.8422 3.5871 11 1 2.1924 2.6825 5.5641 12 1 3.6338 4.2708 4.4325 13 6 4.7206 0.7573 0.9549 14 6 5.3713 0.0010 0.0074 15 6 4.6686 -0.7392 -0.9282 16 6 3.2810 -0.7454 -0.9456 17 8 2.6164 -1.4792 -1.8737 18 6 3.4088 -2.2211 -2.8030 19 9 4.2116 -3.1320 -2.1082 20 9 2.5696 -2.9152 -3.6814 21 9 4.2206 -1.3430 -3.5291 22 1 4.7369 1.3941 4.3974 23 1 5.2892 1.3274 1.6746 24 1 6.4510 -0.0156 -0.0068 25 1 5.2104 -1.3218 -1.6585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396080511.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:50 Heat of formation + Delta-G solvation = -169.355732 kcal Electronic energy + Delta-G solvation = -18508.780547 eV Core-core repulsion = 14843.600610 eV Total energy + Delta-G solvation = -3665.179938 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.39423 -49.12554 -48.95552 -40.86777 -38.51177 -37.01316 -35.62665 -32.05863 -31.08718 -27.71230 -26.83910 -24.16855 -23.23026 -20.93849 -20.35117 -20.10811 -18.99493 -18.69334 -17.16166 -16.93075 -16.18381 -16.15454 -15.79021 -15.63341 -15.46404 -15.38809 -15.10491 -15.09391 -14.67746 -14.35708 -14.25002 -13.91831 -13.60069 -13.39095 -13.04522 -12.87000 -12.35291 -12.17040 -11.97790 -11.63747 -11.19414 -9.58164 -9.29861 -8.92487 -6.66869 0.26064 0.57358 0.77471 1.39507 1.47436 1.53869 1.86843 1.97767 2.14472 2.30432 2.56719 2.86145 3.02168 3.43430 3.52877 4.08190 4.40536 4.62734 4.81977 4.94022 5.05928 5.46358 5.47889 5.76186 5.90504 6.06362 6.36929 6.55494 6.65289 6.89232 8.01441 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.006361 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.657462 B = 4400.735371 C = 4973.714238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.305 3.695 3 C -0.216 4.216 4 C 0.151 3.849 5 C -0.447 4.447 6 H 0.075 0.925 7 C 0.047 3.953 8 N -0.772 5.772 9 Si 0.983 3.017 10 H -0.267 1.267 11 H -0.262 1.262 12 H -0.248 1.248 13 C -0.190 4.190 14 C -0.038 4.038 15 C -0.308 4.308 16 C 0.178 3.822 17 O -0.333 6.333 18 C 0.610 3.390 19 F -0.162 7.162 20 F -0.133 7.133 21 F -0.161 7.161 22 H 0.306 0.694 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -1.705 -4.331 7.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.200 5.200 2 C -0.004 4.004 3 C -0.223 4.223 4 C 0.145 3.855 5 C -0.474 4.474 6 H 0.093 0.907 7 C -0.176 4.176 8 N -0.394 5.394 9 Si 0.802 3.198 10 H -0.191 1.191 11 H -0.186 1.186 12 H -0.171 1.171 13 C -0.209 4.209 14 C -0.057 4.057 15 C -0.328 4.328 16 C 0.134 3.866 17 O -0.253 6.253 18 C 0.519 3.481 19 F -0.144 7.144 20 F -0.115 7.115 21 F -0.143 7.143 22 H 0.118 0.882 23 H 0.147 0.853 24 H 0.158 0.842 25 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.286 -1.807 -4.193 6.262 hybrid contribution 0.151 0.137 0.176 0.269 sum 4.437 -1.669 -4.017 6.214 Atomic orbital electron populations 1.80967 1.12917 1.13544 1.12584 1.25649 0.92702 0.91093 0.90911 1.16382 0.83318 1.14404 1.08198 1.18514 0.92436 0.86654 0.87873 1.19952 1.01837 1.26129 0.99465 0.90716 1.26784 0.94123 0.97849 0.98816 1.69685 1.16041 1.32429 1.21259 0.85122 0.79709 0.77548 0.77402 1.19061 1.18639 1.17138 1.21343 0.92934 1.05055 1.01556 1.20828 0.99984 0.92908 0.91943 1.20764 0.89973 1.13612 1.08455 1.18432 0.91394 0.90398 0.86395 1.86312 1.36723 1.59730 1.42553 1.19190 0.74883 0.76542 0.77444 1.93285 1.73796 1.68029 1.79272 1.93279 1.72318 1.78343 1.67526 1.93284 1.73260 1.69308 1.78406 0.88217 0.85276 0.84175 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.27 18.54 19.00 0.35 -25.92 15 2 C 0.31 15.15 13.86 88.33 1.22 16.38 15 3 C -0.22 -10.27 5.96 -19.45 -0.12 -10.39 15 4 C 0.15 7.22 5.73 -19.87 -0.11 7.10 15 5 C -0.45 -21.52 8.57 23.38 0.20 -21.31 15 6 H 0.07 3.72 7.40 -2.91 -0.02 3.70 15 7 C 0.05 2.02 5.17 85.36 0.44 2.46 15 8 N -0.77 -33.06 10.95 21.88 0.24 -32.82 15 9 Si 0.98 33.04 29.59 68.60 2.03 35.07 15 10 H -0.27 -9.42 7.11 99.48 0.71 -8.71 15 11 H -0.26 -8.51 7.11 99.48 0.71 -7.81 15 12 H -0.25 -7.63 7.11 99.48 0.71 -6.92 15 13 C -0.19 -8.18 8.69 22.73 0.20 -7.98 15 14 C -0.04 -1.41 9.96 22.17 0.22 -1.19 15 15 C -0.31 -11.64 8.24 22.45 0.18 -11.46 15 16 C 0.18 7.56 6.49 22.82 0.15 7.71 15 17 O -0.33 -13.14 9.82 -90.21 -0.89 -14.03 15 18 C 0.61 19.27 3.42 113.37 0.39 19.66 15 19 F -0.16 -4.92 15.55 44.97 0.70 -4.22 15 20 F -0.13 -3.84 17.53 44.97 0.79 -3.05 15 21 F -0.16 -4.79 15.55 44.97 0.70 -4.09 15 22 H 0.31 11.39 8.29 -92.71 -0.77 10.62 15 23 H 0.13 5.56 6.19 -2.91 -0.02 5.54 15 24 H 0.14 4.19 8.06 -2.91 -0.02 4.16 15 25 H 0.13 4.33 5.02 -2.91 -0.01 4.32 15 Total: -1.00 -51.16 249.91 7.97 -43.19 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.27 Total: 4.90 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 2.78 Total: 0.97 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.59 Total: -58.74 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.89 Total: -14.03 kcal Atomic # 9 Polarization: -13.55 SS G_CDS: 2.19 Total: -11.36 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.07 kcal Total: -51.16 7.97 -43.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396080511.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.170 kcal (2) G-P(sol) polarization free energy of solvation -51.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds