Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00450 * 2 1 4 4 H 1.48497 * 109.47084 * 269.99953 * 3 2 1 5 5 H 1.48504 * 109.47063 * 30.00125 * 3 2 1 6 6 H 1.48497 * 109.46842 * 149.99739 * 3 2 1 7 7 C 1.37884 * 119.99220 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00533 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99458 * 179.72616 * 7 2 1 10 10 C 1.50694 * 109.46818 * 180.02562 * 9 7 2 11 11 C 1.38260 * 120.00193 * 101.23351 * 10 9 7 12 12 C 1.38216 * 120.00338 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.00063 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.47046 * 299.99798 * 13 12 11 15 15 F 1.39899 * 109.46932 * 60.00103 * 13 12 11 16 16 C 1.38256 * 119.99763 * 359.95953 * 12 11 10 17 17 C 1.38217 * 120.00043 * 359.97438 * 16 12 11 18 18 C 1.38215 * 120.00232 * 280.95634 * 10 9 7 19 19 N 1.48017 * 119.99448 * 0.02562 * 18 10 9 20 20 O 1.21807 * 119.99874 * 185.70929 * 19 18 10 21 21 O 1.21800 * 120.00336 * 5.70978 * 19 18 10 22 22 H 0.97006 * 119.99079 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46647 * 300.00180 * 9 7 2 24 24 H 1.08998 * 109.47357 * 59.99816 * 9 7 2 25 25 H 1.07998 * 119.99721 * 359.97438 * 11 10 9 26 26 H 1.08996 * 109.47134 * 180.02562 * 13 12 11 27 27 H 1.07997 * 119.99875 * 180.02562 * 16 12 11 28 28 H 1.08000 * 119.99851 * 180.02562 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1943 -0.0057 10 6 4.0136 -2.6151 -0.0044 11 6 4.4591 -3.1920 -1.1793 12 6 4.9202 -4.4950 -1.1780 13 6 5.4051 -5.1239 -2.4587 14 9 4.3664 -5.1339 -3.3958 15 9 6.4809 -4.3852 -2.9628 16 6 4.9368 -5.2212 -0.0016 17 6 4.4927 -4.6440 1.1732 18 6 4.0343 -3.3397 1.1724 19 7 3.5627 -2.7202 2.4312 20 8 3.6770 -3.3199 3.4853 21 8 3.0602 -1.6108 2.4132 22 1 -0.4849 0.8402 -0.0004 23 1 3.8711 -0.6829 -0.8987 24 1 3.8785 -0.6779 0.8813 25 1 4.4467 -2.6245 -2.0980 26 1 5.7266 -6.1467 -2.2622 27 1 5.2974 -6.2391 -0.0005 28 1 4.5061 -5.2112 2.0921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396081651.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = -76.950440 kcal Electronic energy + Delta-G solvation = -18884.676763 eV Core-core repulsion = 15346.964125 eV Total energy + Delta-G solvation = -3537.712638 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.14410 -47.12719 -41.51980 -39.28630 -35.91364 -33.88948 -32.42634 -31.75416 -28.33364 -27.56878 -24.44779 -23.50987 -22.01187 -20.85531 -18.53039 -18.06474 -17.38385 -17.33917 -17.15855 -17.10979 -16.52225 -15.13891 -14.67465 -14.23293 -14.08778 -14.05500 -13.49227 -13.35074 -12.93757 -12.68177 -12.34700 -12.22127 -11.57210 -11.32367 -10.81224 -10.70544 -10.60114 -10.32577 -10.18605 -9.76096 -9.56758 -9.47057 -8.70737 -8.59853 -6.13504 -4.10805 0.20405 1.16731 1.76742 2.08055 3.28526 3.37570 3.39848 3.41153 3.46195 3.91428 4.29443 4.39288 4.65724 4.68757 4.83606 5.01925 5.17491 5.23122 5.44907 5.72847 5.85878 5.99196 6.11032 6.47498 6.71318 6.96166 7.16310 7.52217 8.32351 8.43081 8.82888 9.44656 10.98903 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.007938 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.863225 B = 3526.384053 C = 4490.176699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.069 0.931 9 C 0.001 3.999 10 C 0.031 3.969 11 C -0.085 4.085 12 C -0.131 4.131 13 C 0.315 3.685 14 F -0.194 7.194 15 F -0.197 7.197 16 C -0.113 4.113 17 C -0.062 4.062 18 C -0.026 4.026 19 N 0.021 4.979 20 O -0.229 6.229 21 O -0.078 6.078 22 H 0.267 0.733 23 H 0.031 0.969 24 H 0.065 0.935 25 H 0.147 0.853 26 H 0.122 0.878 27 H 0.144 0.856 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.282 -10.413 -3.093 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.122 4.122 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.087 0.913 9 C -0.036 4.036 10 C 0.029 3.971 11 C -0.103 4.103 12 C -0.132 4.132 13 C 0.261 3.739 14 F -0.175 7.175 15 F -0.178 7.178 16 C -0.132 4.132 17 C -0.081 4.081 18 C -0.110 4.110 19 N 0.536 4.464 20 O -0.422 6.422 21 O -0.310 6.310 22 H 0.077 0.923 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.165 0.835 26 H 0.139 0.861 27 H 0.162 0.838 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.401 -10.732 -3.599 16.791 hybrid contribution 0.100 0.999 0.216 1.027 sum 12.501 -9.734 -3.383 16.201 Atomic orbital electron populations 1.69874 1.06339 1.27338 1.49218 1.24837 0.94650 0.98978 0.93783 0.86776 0.80793 0.83514 0.78328 1.20328 1.20882 1.18600 1.20493 0.86582 0.94782 1.51532 0.91299 1.19343 0.98799 0.86166 0.99318 1.20359 0.88170 0.99271 0.89283 1.20986 0.97100 0.93817 0.98429 1.20685 1.01528 0.96034 0.94972 1.20385 0.75288 0.95720 0.82478 1.93054 1.59425 1.97490 1.67554 1.93028 1.56014 1.80166 1.88641 1.20675 1.01753 1.00283 0.90473 1.20876 0.94949 0.92313 0.99915 1.21094 1.08918 0.95299 0.85693 1.43421 0.99729 1.01394 1.01902 1.94434 1.63559 1.64987 1.19261 1.94699 1.39313 1.04007 1.92974 0.92297 0.95055 0.91794 0.83514 0.86073 0.83806 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.96 55.43 0.77 -25.94 15 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 15 3 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 15 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 15 7 C -0.50 -13.55 8.01 -34.43 -0.28 -13.82 15 8 H 0.07 2.08 7.98 -52.49 -0.42 1.66 15 9 C 0.00 0.01 3.47 -29.03 -0.10 -0.09 15 10 C 0.03 0.60 5.08 -104.63 -0.53 0.07 15 11 C -0.08 -1.39 9.22 -39.58 -0.36 -1.75 15 12 C -0.13 -1.70 5.37 -104.63 -0.56 -2.26 15 13 C 0.31 3.29 5.45 36.00 0.20 3.49 15 14 F -0.19 -2.50 17.26 2.25 0.04 -2.46 15 15 F -0.20 -2.35 17.26 2.25 0.04 -2.31 15 16 C -0.11 -1.30 9.67 -39.58 -0.38 -1.68 15 17 C -0.06 -0.89 9.56 -39.58 -0.38 -1.27 15 18 C -0.03 -0.50 6.82 -79.95 -0.54 -1.05 15 19 N 0.02 0.45 4.45 33.96 0.15 0.60 15 20 O -0.23 -4.80 18.46 -29.46 -0.54 -5.34 15 21 O -0.08 -1.91 14.19 -29.46 -0.42 -2.33 15 22 H 0.27 7.49 8.31 -40.82 -0.34 7.16 15 23 H 0.03 0.67 7.43 -51.93 -0.39 0.29 15 24 H 0.06 1.51 5.20 -51.93 -0.27 1.24 15 25 H 0.15 2.29 8.03 -52.49 -0.42 1.86 15 26 H 0.12 0.72 7.88 -51.93 -0.41 0.31 15 27 H 0.14 1.00 7.95 -52.49 -0.42 0.58 15 28 H 0.15 1.88 7.62 -52.49 -0.40 1.48 15 LS Contribution 262.31 15.07 3.95 3.95 Total: -1.00 -31.50 262.31 -5.61 -37.11 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -1.89 Total: -3.47 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -3.04 Total: -16.18 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.92 Total: -25.34 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.96 Total: -7.67 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.08 Total: -4.78 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.50 -5.61 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396081651.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.841 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds