Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00450 * 2 1 4 4 H 1.48497 * 109.47084 * 269.99953 * 3 2 1 5 5 H 1.48504 * 109.47063 * 30.00125 * 3 2 1 6 6 H 1.48497 * 109.46842 * 149.99739 * 3 2 1 7 7 C 1.37884 * 119.99220 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00533 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99458 * 179.72616 * 7 2 1 10 10 C 1.50694 * 109.46818 * 180.02562 * 9 7 2 11 11 C 1.38260 * 120.00193 * 101.23351 * 10 9 7 12 12 C 1.38216 * 120.00338 * 179.97438 * 11 10 9 13 13 C 1.50696 * 120.00063 * 179.97438 * 12 11 10 14 14 F 1.39903 * 109.47046 * 299.99798 * 13 12 11 15 15 F 1.39899 * 109.46932 * 60.00103 * 13 12 11 16 16 C 1.38256 * 119.99763 * 359.95953 * 12 11 10 17 17 C 1.38217 * 120.00043 * 359.97438 * 16 12 11 18 18 C 1.38215 * 120.00232 * 280.95634 * 10 9 7 19 19 N 1.48017 * 119.99448 * 0.02562 * 18 10 9 20 20 O 1.21807 * 119.99874 * 185.70929 * 19 18 10 21 21 O 1.21800 * 120.00336 * 5.70978 * 19 18 10 22 22 H 0.97006 * 119.99079 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46647 * 300.00180 * 9 7 2 24 24 H 1.08998 * 109.47357 * 59.99816 * 9 7 2 25 25 H 1.07998 * 119.99721 * 359.97438 * 11 10 9 26 26 H 1.08996 * 109.47134 * 180.02562 * 13 12 11 27 27 H 1.07997 * 119.99875 * 180.02562 * 16 12 11 28 28 H 1.08000 * 119.99851 * 180.02562 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4399 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1943 -0.0057 10 6 4.0136 -2.6151 -0.0044 11 6 4.4591 -3.1920 -1.1793 12 6 4.9202 -4.4950 -1.1780 13 6 5.4051 -5.1239 -2.4587 14 9 4.3664 -5.1339 -3.3958 15 9 6.4809 -4.3852 -2.9628 16 6 4.9368 -5.2212 -0.0016 17 6 4.4927 -4.6440 1.1732 18 6 4.0343 -3.3397 1.1724 19 7 3.5627 -2.7202 2.4312 20 8 3.6770 -3.3199 3.4853 21 8 3.0602 -1.6108 2.4132 22 1 -0.4849 0.8402 -0.0004 23 1 3.8711 -0.6829 -0.8987 24 1 3.8785 -0.6779 0.8813 25 1 4.4467 -2.6245 -2.0980 26 1 5.7266 -6.1467 -2.2622 27 1 5.2974 -6.2391 -0.0005 28 1 4.5061 -5.2112 2.0921 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396081651.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = -96.614084 kcal Electronic energy + Delta-G solvation = -18885.529443 eV Core-core repulsion = 15346.964125 eV Total energy + Delta-G solvation = -3538.565318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.01012 -48.01086 -43.13937 -40.58585 -37.59957 -35.59348 -33.99845 -33.25185 -30.02407 -28.83020 -25.83324 -25.08892 -23.40584 -22.30615 -20.01657 -19.53612 -19.14832 -18.39334 -18.23977 -18.21365 -18.19891 -16.45118 -16.34103 -15.74853 -15.17650 -14.98528 -14.91206 -14.41760 -14.37655 -14.07103 -13.97621 -13.56483 -13.05385 -12.67371 -12.43953 -12.33493 -12.16814 -12.06290 -11.97686 -11.70838 -11.42369 -10.75135 -10.71448 -10.05947 -8.29837 -6.31801 -1.21866 -0.02472 0.26098 0.58094 1.33821 1.39594 1.49783 2.15548 2.36360 2.56258 3.06870 3.19112 3.30543 3.45533 3.65536 3.89422 3.99883 4.10048 4.21925 4.51475 4.67259 4.69368 4.87792 4.93740 5.15960 5.31240 5.44808 5.59918 6.13064 6.62960 6.71307 7.28760 8.87231 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.007938 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.863225 B = 3526.384053 C = 4490.176699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.019 3.981 3 Si 0.943 3.057 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.492 4.492 8 H 0.021 0.979 9 C 0.006 3.994 10 C -0.004 4.004 11 C -0.100 4.100 12 C -0.119 4.119 13 C 0.314 3.686 14 F -0.211 7.211 15 F -0.207 7.207 16 C -0.077 4.077 17 C -0.057 4.057 18 C -0.052 4.052 19 N 0.024 4.976 20 O -0.181 6.181 21 O -0.172 6.172 22 H 0.268 0.732 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.144 0.856 26 H 0.188 0.812 27 H 0.213 0.787 28 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.428 -13.547 -3.608 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.031 4.031 10 C -0.005 4.005 11 C -0.119 4.119 12 C -0.120 4.120 13 C 0.262 3.738 14 F -0.192 7.192 15 F -0.188 7.188 16 C -0.095 4.095 17 C -0.075 4.075 18 C -0.136 4.136 19 N 0.535 4.465 20 O -0.393 6.393 21 O -0.382 6.382 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.162 0.838 26 H 0.205 0.795 27 H 0.229 0.771 28 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 15.501 -13.703 -4.221 21.116 hybrid contribution -0.725 1.559 0.442 1.775 sum 14.776 -12.144 -3.779 19.496 Atomic orbital electron populations 1.70027 1.08218 1.28209 1.52280 1.25748 0.95424 1.02962 0.93693 0.85757 0.79676 0.78686 0.79205 1.18494 1.20890 1.17461 1.20589 0.89203 0.92709 1.50447 0.96097 1.19060 0.95762 0.89336 0.98930 1.20137 0.91097 0.98082 0.91195 1.21064 0.97949 0.95876 0.97021 1.21179 0.99041 0.94396 0.97422 1.21010 0.74411 0.98051 0.80369 1.93032 1.60462 1.97607 1.68086 1.93019 1.56287 1.80853 1.88615 1.21421 0.97786 1.02341 0.87925 1.21410 0.93549 0.90083 1.02506 1.21431 1.11119 0.97210 0.83830 1.43929 0.98554 1.01009 1.02962 1.94355 1.60604 1.63901 1.20410 1.94737 1.43926 1.05950 1.93627 0.92351 0.94145 0.93109 0.83813 0.79506 0.77061 0.80312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.53 13.96 21.45 0.30 -60.23 15 2 C 0.02 1.15 5.47 84.66 0.46 1.61 15 3 Si 0.94 45.40 27.47 68.60 1.88 47.29 15 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 15 5 H -0.28 -13.49 7.11 99.48 0.71 -12.78 15 6 H -0.25 -11.48 6.54 99.48 0.65 -10.83 15 7 C -0.49 -28.71 8.01 25.60 0.21 -28.51 15 8 H 0.02 1.36 7.98 -2.91 -0.02 1.34 15 9 C 0.01 0.30 3.47 29.10 0.10 0.40 15 10 C 0.00 -0.15 5.08 -19.87 -0.10 -0.25 15 11 C -0.10 -3.17 9.22 22.27 0.21 -2.96 15 12 C -0.12 -2.56 5.37 -19.87 -0.11 -2.66 15 13 C 0.31 4.87 5.45 71.23 0.39 5.26 15 14 F -0.21 -4.68 17.26 44.97 0.78 -3.90 15 15 F -0.21 -4.08 17.26 44.97 0.78 -3.30 15 16 C -0.08 -1.25 9.67 22.27 0.22 -1.04 15 17 C -0.06 -1.39 9.56 22.27 0.21 -1.18 15 18 C -0.05 -1.95 6.82 36.37 0.25 -1.70 15 19 N 0.02 1.05 4.45 -46.47 -0.21 0.84 15 20 O -0.18 -7.36 18.46 18.88 0.35 -7.02 15 21 O -0.17 -8.91 14.19 18.89 0.27 -8.64 15 22 H 0.27 15.95 8.31 -92.70 -0.77 15.18 15 23 H 0.04 1.80 7.43 -2.38 -0.02 1.79 15 24 H 0.05 2.55 5.20 -2.39 -0.01 2.54 15 25 H 0.14 4.47 8.03 -2.91 -0.02 4.45 15 26 H 0.19 0.62 7.88 -2.39 -0.02 0.60 15 27 H 0.21 0.75 7.95 -2.91 -0.02 0.73 15 28 H 0.18 3.42 7.62 -2.91 -0.02 3.40 15 Total: -1.00 -77.68 262.31 7.13 -70.55 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: 1.15 Total: -4.56 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 1.83 Total: -31.03 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.09 Total: -59.39 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.62 Total: -15.65 kcal Atomic # 9 Polarization: -8.75 SS G_CDS: 1.55 Total: -7.20 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -77.68 7.13 -70.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396081651.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.060 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds