Wall clock time and date at job start Mon Mar 30 2020 06:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86792 * 120.00073 * 2 1 4 4 H 1.48501 * 109.46968 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47434 * 299.99596 * 3 2 1 6 6 H 1.48504 * 109.47452 * 59.99983 * 3 2 1 7 7 C 1.37877 * 119.99438 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99541 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00489 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.38258 * 119.99710 * 265.00264 * 10 9 7 12 12 C 1.38218 * 120.00254 * 179.97438 * 11 10 9 13 13 C 1.38262 * 119.99608 * 359.97438 * 12 11 10 14 14 C 1.38220 * 119.99800 * 0.25891 * 13 12 11 15 15 N 1.48020 * 119.99623 * 179.72420 * 14 13 12 16 16 O 1.21803 * 119.99726 * 5.98160 * 15 14 13 17 17 O 1.21796 * 119.99956 * 185.98905 * 15 14 13 18 18 C 1.38208 * 120.00435 * 84.97246 * 10 9 7 19 19 C 1.50702 * 120.00041 * 0.02562 * 18 10 9 20 20 F 1.39904 * 109.47080 * 116.69595 * 19 18 10 21 21 F 1.39897 * 109.47292 * 236.70078 * 19 18 10 22 22 H 0.96999 * 119.99683 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.46948 * 59.99872 * 9 7 2 24 24 H 1.08999 * 109.46902 * 299.99825 * 9 7 2 25 25 H 1.08000 * 119.99773 * 359.97406 * 11 10 9 26 26 H 1.07993 * 120.00283 * 179.97438 * 12 11 10 27 27 H 1.07993 * 120.00052 * 179.97438 * 13 12 11 28 28 H 1.09009 * 109.46938 * 356.69924 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 6 2.6010 -4.2384 -1.1905 12 6 3.4996 -5.2887 -1.1895 13 6 4.0280 -5.7452 0.0038 14 6 3.6535 -5.1547 1.1962 15 7 4.2146 -5.6475 2.4742 16 8 5.0864 -6.4981 2.4689 17 8 3.8044 -5.2024 3.5312 18 6 2.7581 -4.1013 1.1947 19 6 2.3541 -3.4541 2.4943 20 9 1.6900 -4.3900 3.2946 21 9 3.4950 -2.9958 3.1616 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.1886 -3.8815 -2.1226 26 1 3.7889 -5.7527 -2.1207 27 1 4.7297 -6.5660 0.0047 28 1 1.6901 -2.6139 2.2907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396081851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:34 Heat of formation + Delta-G solvation = -101.603215 kcal Electronic energy + Delta-G solvation = -19425.345762 eV Core-core repulsion = 15886.564099 eV Total energy + Delta-G solvation = -3538.781663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.97716 -47.95276 -43.29439 -40.68549 -37.72110 -35.83464 -33.76120 -33.42502 -29.64397 -28.18173 -26.68379 -25.48776 -23.17625 -22.34591 -19.87152 -19.74828 -18.80158 -18.64804 -18.54042 -18.27373 -18.14662 -16.67484 -16.20804 -16.13350 -14.98141 -14.92325 -14.69390 -14.33742 -14.15524 -13.87282 -13.53443 -13.32223 -13.17490 -12.77699 -12.66313 -12.64463 -12.35500 -12.24874 -11.96681 -11.69105 -11.56374 -10.66843 -10.58688 -10.11021 -8.29627 -6.42350 -1.29465 -0.12588 0.29392 0.32101 1.37446 1.42350 1.51566 2.21804 2.39224 2.53999 3.04830 3.16454 3.23450 3.59997 3.91198 3.93386 3.97188 3.99582 4.20266 4.53969 4.69869 4.92096 5.02596 5.13109 5.23103 5.49916 5.51127 5.64449 5.99419 6.48197 6.69215 7.28621 8.79753 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.007680 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.141951 B = 3644.836473 C = 4141.220590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.023 4.023 11 C -0.067 4.067 12 C -0.074 4.074 13 C -0.067 4.067 14 C -0.037 4.037 15 N 0.026 4.974 16 O -0.146 6.146 17 O -0.196 6.196 18 C -0.134 4.134 19 C 0.307 3.693 20 F -0.200 7.200 21 F -0.204 7.204 22 H 0.268 0.732 23 H 0.039 0.961 24 H 0.018 0.982 25 H 0.170 0.830 26 H 0.202 0.798 27 H 0.182 0.818 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -9.482 -4.673 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.010 3.990 10 C -0.024 4.024 11 C -0.085 4.085 12 C -0.092 4.092 13 C -0.086 4.086 14 C -0.120 4.120 15 N 0.542 4.458 16 O -0.368 6.368 17 O -0.402 6.402 18 C -0.136 4.136 19 C 0.254 3.746 20 F -0.181 7.181 21 F -0.185 7.185 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.187 0.813 26 H 0.219 0.781 27 H 0.199 0.801 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.067 -9.104 -5.180 11.635 hybrid contribution 0.284 0.975 0.974 1.407 sum 5.351 -8.128 -4.206 10.602 Atomic orbital electron populations 1.70023 1.07266 1.28207 1.50091 1.25685 0.95567 1.02440 0.94250 0.85570 0.79012 0.79626 0.77977 1.19347 1.19867 1.20720 1.21240 0.93040 0.90602 1.52398 0.92655 1.18346 0.92631 0.89584 0.98452 1.20422 0.95751 0.95095 0.91090 1.21970 0.94829 0.93525 0.98178 1.21840 0.93922 0.94858 0.98587 1.21449 0.98756 0.99703 0.88707 1.21191 1.04270 1.02113 0.84432 1.43854 0.99329 0.99147 1.03474 1.94408 1.23224 1.24862 1.94278 1.94643 1.64212 1.61097 1.20284 1.20115 0.99525 0.97131 0.96850 1.20629 0.82327 0.89601 0.82068 1.92967 1.80697 1.68518 1.75964 1.92952 1.53652 1.89406 1.82466 0.92244 0.94238 0.96378 0.81285 0.78074 0.80104 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.46 13.29 21.45 0.28 -49.17 15 2 C 0.02 1.08 5.46 84.65 0.46 1.54 15 3 Si 0.95 40.89 29.54 68.60 2.03 42.92 15 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 7 C -0.54 -26.46 8.81 25.60 0.23 -26.23 15 8 H 0.06 2.75 7.74 -2.91 -0.02 2.73 15 9 C 0.05 2.05 4.41 29.10 0.13 2.18 15 10 C -0.02 -0.81 5.07 -19.87 -0.10 -0.91 15 11 C -0.07 -1.73 9.68 22.27 0.22 -1.51 15 12 C -0.07 -1.39 10.05 22.27 0.22 -1.16 15 13 C -0.07 -1.59 9.56 22.27 0.21 -1.37 15 14 C -0.04 -1.26 6.75 36.37 0.25 -1.01 15 15 N 0.03 0.98 4.44 -46.46 -0.21 0.77 15 16 O -0.15 -5.06 18.46 18.88 0.35 -4.72 15 17 O -0.20 -8.34 13.25 18.89 0.25 -8.08 15 18 C -0.13 -5.08 5.37 -19.87 -0.11 -5.18 15 19 C 0.31 12.82 4.67 71.24 0.33 13.15 15 20 F -0.20 -8.44 15.11 44.97 0.68 -7.76 15 21 F -0.20 -9.02 14.97 44.97 0.67 -8.34 15 22 H 0.27 13.72 8.31 -92.71 -0.77 12.95 15 23 H 0.04 1.77 8.05 -2.39 -0.02 1.75 15 24 H 0.02 0.86 6.45 -2.39 -0.02 0.85 15 25 H 0.17 3.59 8.06 -2.91 -0.02 3.56 15 26 H 0.20 1.62 8.06 -2.91 -0.02 1.59 15 27 H 0.18 3.15 7.62 -2.91 -0.02 3.13 15 28 H 0.14 5.83 5.41 -2.38 -0.01 5.82 15 Total: -1.00 -62.30 259.90 7.11 -55.19 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.21 Total: -0.29 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 1.84 Total: -20.52 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.08 Total: -48.40 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.60 Total: -12.80 kcal Atomic # 9 Polarization: -17.46 SS G_CDS: 1.35 Total: -16.10 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -62.30 7.11 -55.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396081851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.409 kcal (2) G-P(sol) polarization free energy of solvation -62.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds