Wall clock time and date at job start Mon Mar 30 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99448 * 2 1 4 4 H 1.48505 * 109.46950 * 269.99764 * 3 2 1 5 5 H 1.48493 * 109.46988 * 30.00060 * 3 2 1 6 6 H 1.48501 * 109.46720 * 150.00065 * 3 2 1 7 7 C 1.37875 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99699 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46607 * 180.02562 * 9 7 2 11 11 C 1.38265 * 119.99505 * 264.97262 * 10 9 7 12 12 C 1.38215 * 119.99738 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.00073 * 0.02851 * 12 11 10 14 14 C 1.38218 * 119.99977 * 359.76076 * 13 12 11 15 15 C 1.50698 * 120.00324 * 180.25193 * 14 13 12 16 16 F 1.39897 * 109.47407 * 120.21365 * 15 14 13 17 17 F 1.39900 * 109.47419 * 240.21912 * 15 14 13 18 18 C 1.38207 * 120.00545 * 85.00246 * 10 9 7 19 19 N 1.48026 * 119.99642 * 359.97214 * 18 10 9 20 20 O 1.21799 * 119.99788 * 90.00642 * 19 18 10 21 21 O 1.21796 * 119.99954 * 270.00434 * 19 18 10 22 22 H 0.96993 * 120.00268 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47066 * 60.00282 * 9 7 2 24 24 H 1.08994 * 109.47090 * 299.99524 * 9 7 2 25 25 H 1.07991 * 120.00032 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.99700 * 180.02562 * 12 11 10 27 27 H 1.07999 * 120.00058 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.46778 * 0.21513 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0140 -2.6147 -0.0013 11 6 4.3429 -3.2327 1.1910 12 6 4.8031 -4.5360 1.1898 13 6 4.9352 -5.2214 -0.0036 14 6 4.6022 -4.6050 -1.1951 15 6 4.7408 -5.3540 -2.4955 16 9 3.4935 -5.4313 -3.1243 17 9 5.6417 -4.6809 -3.3277 18 6 4.1465 -3.2997 -1.1943 19 7 3.7945 -2.6380 -2.4708 20 8 4.6402 -2.0150 -3.0873 21 8 2.6590 -2.7164 -2.9045 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6806 0.8905 24 1 3.8752 -0.6795 -0.8894 25 1 4.2394 -2.6974 2.1231 26 1 5.0596 -5.0189 2.1211 27 1 5.2952 -6.2396 -0.0046 28 1 5.1109 -6.3599 -2.2976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396085663.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:18 Heat of formation + Delta-G solvation = -80.289530 kcal Electronic energy + Delta-G solvation = -19449.474589 eV Core-core repulsion = 15911.617157 eV Total energy + Delta-G solvation = -3537.857432 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.10587 -47.08133 -41.55642 -39.31306 -35.74289 -34.16174 -32.37417 -31.98927 -28.69562 -26.72117 -25.38479 -23.45459 -21.73073 -20.91940 -18.72944 -18.08803 -17.68661 -17.28609 -17.12008 -16.96751 -16.53137 -15.26883 -14.84225 -14.49823 -14.01543 -13.80409 -13.42835 -13.15227 -12.96638 -12.59368 -12.31782 -12.10583 -11.80451 -11.30419 -10.93079 -10.74785 -10.63505 -10.36192 -10.34667 -10.24386 -9.63019 -9.40040 -8.75896 -8.71281 -6.21082 -4.25320 0.69536 1.06878 1.23699 1.94989 3.21908 3.27902 3.30882 3.34282 3.40622 3.88327 4.19503 4.29277 4.71193 4.81209 4.82789 5.05662 5.11888 5.14971 5.26702 5.63828 5.90105 6.00793 6.18213 6.47764 6.60374 6.81851 6.98015 7.38420 8.25737 8.27506 8.79697 9.35534 10.90893 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.008214 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.903148 B = 3408.119548 C = 3877.037326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.082 3.918 3 Si 0.872 3.128 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.079 0.921 9 C 0.002 3.998 10 C 0.015 3.985 11 C -0.090 4.090 12 C -0.090 4.090 13 C -0.100 4.100 14 C -0.134 4.134 15 C 0.299 3.701 16 F -0.187 7.187 17 F -0.191 7.191 18 C 0.009 3.991 19 N 0.021 4.979 20 O -0.165 6.165 21 O -0.098 6.098 22 H 0.268 0.732 23 H 0.046 0.954 24 H 0.028 0.972 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.774 -11.423 1.845 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.122 4.122 3 Si 0.698 3.302 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.097 0.903 9 C -0.036 4.036 10 C 0.014 3.986 11 C -0.108 4.108 12 C -0.108 4.108 13 C -0.119 4.119 14 C -0.136 4.136 15 C 0.245 3.755 16 F -0.168 7.168 17 F -0.172 7.172 18 C -0.072 4.072 19 N 0.553 4.447 20 O -0.379 6.379 21 O -0.331 6.331 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.161 0.839 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 11.857 -11.604 2.463 16.773 hybrid contribution 0.153 1.110 -0.410 1.193 sum 12.011 -10.495 2.053 16.081 Atomic orbital electron populations 1.69863 1.06170 1.27367 1.48616 1.24889 0.94753 0.98868 0.93679 0.86892 0.80243 0.83781 0.79246 1.19539 1.20707 1.19060 1.20666 0.86617 0.95380 1.53828 0.90305 1.19092 0.98970 0.86485 0.99004 1.20201 0.89981 0.99072 0.89395 1.21297 0.97028 0.94786 0.97736 1.21376 0.96947 0.94363 0.98116 1.20742 1.00592 1.00271 0.90280 1.20023 1.04370 0.92742 0.96461 1.20566 0.75321 0.96746 0.82821 1.93115 1.42830 1.97201 1.83693 1.93092 1.67390 1.82945 1.73762 1.20554 1.07890 0.93497 0.85218 1.43295 1.00502 0.99411 1.01496 1.94498 1.44864 1.40204 1.58333 1.94606 1.05366 1.63224 1.69918 0.92166 0.93586 0.95422 0.83420 0.84047 0.83858 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.82 13.96 55.43 0.77 -26.05 15 2 C 0.08 2.36 5.47 -17.82 -0.10 2.27 15 3 Si 0.87 21.35 27.47 -169.99 -4.67 16.68 15 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 15 7 C -0.53 -14.79 9.65 -34.44 -0.33 -15.13 15 8 H 0.08 2.43 7.98 -52.49 -0.42 2.01 15 9 C 0.00 0.04 3.87 -29.03 -0.11 -0.08 15 10 C 0.01 0.29 5.07 -104.62 -0.53 -0.24 15 11 C -0.09 -1.37 9.68 -39.58 -0.38 -1.75 15 12 C -0.09 -1.03 10.05 -39.58 -0.40 -1.43 15 13 C -0.10 -1.14 9.67 -39.58 -0.38 -1.53 15 14 C -0.13 -2.09 5.37 -104.62 -0.56 -2.65 15 15 C 0.30 4.20 5.10 36.00 0.18 4.39 15 16 F -0.19 -3.21 16.36 2.25 0.04 -3.17 15 17 F -0.19 -3.11 16.40 2.25 0.04 -3.07 15 18 C 0.01 0.18 5.99 -79.95 -0.48 -0.30 15 19 N 0.02 0.49 2.26 33.96 0.08 0.57 15 20 O -0.16 -3.81 18.61 -29.46 -0.55 -4.36 15 21 O -0.10 -2.46 18.66 -29.46 -0.55 -3.01 15 22 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 23 H 0.05 1.02 7.11 -51.93 -0.37 0.65 15 24 H 0.03 0.70 6.95 -51.93 -0.36 0.33 15 25 H 0.15 1.96 8.06 -52.49 -0.42 1.54 15 26 H 0.14 1.04 8.06 -52.49 -0.42 0.62 15 27 H 0.14 0.98 7.95 -52.49 -0.42 0.56 15 28 H 0.13 1.07 7.88 -51.93 -0.41 0.66 15 LS Contribution 266.68 15.07 4.02 4.02 Total: -1.00 -33.68 266.68 -5.91 -39.58 By element: Atomic # 1 Polarization: -2.76 SS G_CDS: -1.99 Total: -4.75 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -3.09 Total: -16.44 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.85 Total: -25.48 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -1.10 Total: -7.37 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.07 Total: -6.24 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -33.68 -5.91 -39.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085663.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.709 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds