Wall clock time and date at job start Mon Mar 30 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99448 * 2 1 4 4 H 1.48505 * 109.46950 * 269.99764 * 3 2 1 5 5 H 1.48493 * 109.46988 * 30.00060 * 3 2 1 6 6 H 1.48501 * 109.46720 * 150.00065 * 3 2 1 7 7 C 1.37875 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99699 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.46607 * 180.02562 * 9 7 2 11 11 C 1.38265 * 119.99505 * 264.97262 * 10 9 7 12 12 C 1.38215 * 119.99738 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.00073 * 0.02851 * 12 11 10 14 14 C 1.38218 * 119.99977 * 359.76076 * 13 12 11 15 15 C 1.50698 * 120.00324 * 180.25193 * 14 13 12 16 16 F 1.39897 * 109.47407 * 120.21365 * 15 14 13 17 17 F 1.39900 * 109.47419 * 240.21912 * 15 14 13 18 18 C 1.38207 * 120.00545 * 85.00246 * 10 9 7 19 19 N 1.48026 * 119.99642 * 359.97214 * 18 10 9 20 20 O 1.21799 * 119.99788 * 90.00642 * 19 18 10 21 21 O 1.21796 * 119.99954 * 270.00434 * 19 18 10 22 22 H 0.96993 * 120.00268 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47066 * 60.00282 * 9 7 2 24 24 H 1.08994 * 109.47090 * 299.99524 * 9 7 2 25 25 H 1.07991 * 120.00032 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.99700 * 180.02562 * 12 11 10 27 27 H 1.07999 * 120.00058 * 179.97438 * 13 12 11 28 28 H 1.09001 * 109.46778 * 0.21513 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 0.0000 10 6 4.0140 -2.6147 -0.0013 11 6 4.3429 -3.2327 1.1910 12 6 4.8031 -4.5360 1.1898 13 6 4.9352 -5.2214 -0.0036 14 6 4.6022 -4.6050 -1.1951 15 6 4.7408 -5.3540 -2.4955 16 9 3.4935 -5.4313 -3.1243 17 9 5.6417 -4.6809 -3.3277 18 6 4.1465 -3.2997 -1.1943 19 7 3.7945 -2.6380 -2.4708 20 8 4.6402 -2.0150 -3.0873 21 8 2.6590 -2.7164 -2.9045 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6806 0.8905 24 1 3.8752 -0.6795 -0.8894 25 1 4.2394 -2.6974 2.1231 26 1 5.0596 -5.0189 2.1211 27 1 5.2952 -6.2396 -0.0046 28 1 5.1109 -6.3599 -2.2976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396085663.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:18 Heat of formation + Delta-G solvation = -102.062096 kcal Electronic energy + Delta-G solvation = -19450.418718 eV Core-core repulsion = 15911.617157 eV Total energy + Delta-G solvation = -3538.801561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.25664 -48.26528 -43.23780 -40.57483 -37.54552 -35.88422 -34.03712 -33.37450 -30.42963 -28.07471 -26.75198 -25.22050 -23.05872 -22.41634 -20.19688 -19.85422 -19.16028 -18.97545 -18.45038 -18.30796 -17.93243 -16.56027 -16.21926 -16.18080 -15.36187 -15.19948 -14.63322 -14.60737 -14.41153 -14.09786 -13.95468 -13.43298 -13.20252 -12.80192 -12.72897 -12.64843 -12.23952 -12.19153 -12.03387 -11.96277 -11.78494 -10.93163 -10.54228 -10.10083 -8.42832 -6.51298 -0.60772 -0.49954 -0.08951 0.42153 1.24131 1.28826 1.36151 2.21501 2.21916 2.36777 2.89500 2.95575 3.10665 3.65166 3.71776 3.83546 3.93174 4.01561 4.15766 4.39441 4.66459 4.69898 4.86084 5.04566 5.14125 5.25675 5.30632 5.55847 6.03657 6.40376 6.53270 7.12778 8.73384 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.025131 B = 0.008214 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.903148 B = 3408.119548 C = 3877.037326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.020 3.980 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.032 0.968 9 C 0.008 3.992 10 C -0.030 4.030 11 C -0.094 4.094 12 C -0.064 4.064 13 C -0.068 4.068 14 C -0.149 4.149 15 C 0.287 3.713 16 F -0.213 7.213 17 F -0.209 7.209 18 C -0.029 4.029 19 N 0.025 4.975 20 O -0.155 6.155 21 O -0.171 6.171 22 H 0.271 0.729 23 H 0.063 0.937 24 H 0.004 0.996 25 H 0.165 0.835 26 H 0.201 0.799 27 H 0.210 0.790 28 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.975 -13.657 4.267 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.205 1.205 5 H -0.193 1.193 6 H -0.161 1.161 7 C -0.564 4.564 8 H 0.050 0.950 9 C -0.029 4.029 10 C -0.031 4.031 11 C -0.112 4.112 12 C -0.081 4.081 13 C -0.085 4.085 14 C -0.151 4.151 15 C 0.234 3.766 16 F -0.195 7.195 17 F -0.190 7.190 18 C -0.109 4.109 19 N 0.552 4.448 20 O -0.379 6.379 21 O -0.389 6.389 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.023 0.977 25 H 0.182 0.818 26 H 0.218 0.782 27 H 0.227 0.773 28 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 14.960 -13.882 4.893 20.987 hybrid contribution -0.720 1.638 -1.098 2.099 sum 14.240 -12.244 3.796 19.160 Atomic orbital electron populations 1.70012 1.08082 1.28540 1.50631 1.25857 0.95620 1.03018 0.93408 0.85853 0.80133 0.78940 0.79049 1.20454 1.19347 1.16135 1.20841 0.89417 0.93493 1.52690 0.94958 1.18842 0.95750 0.89924 0.98405 1.20087 0.93813 0.97775 0.91434 1.21640 0.96586 0.96784 0.96208 1.22069 0.93219 0.92212 1.00591 1.21601 0.96526 1.02368 0.88032 1.20585 1.04425 0.90966 0.99173 1.21474 0.74171 0.99520 0.81459 1.93065 1.44839 1.97353 1.84193 1.93049 1.67829 1.83778 1.74378 1.20925 1.11354 0.95715 0.82869 1.43884 0.99708 0.98636 1.02548 1.94423 1.44483 1.39636 1.59327 1.94594 1.06583 1.65769 1.71996 0.91955 0.91845 0.97741 0.81768 0.78164 0.77327 0.78146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.47 13.96 21.45 0.30 -59.17 15 2 C 0.02 1.21 5.47 84.65 0.46 1.68 15 3 Si 0.94 45.04 27.47 68.60 1.88 46.93 15 4 H -0.28 -13.68 7.11 99.48 0.71 -12.98 15 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 6 H -0.24 -10.27 6.54 99.48 0.65 -9.62 15 7 C -0.53 -31.06 9.65 25.60 0.25 -30.81 15 8 H 0.03 2.13 7.98 -2.91 -0.02 2.11 15 9 C 0.01 0.39 3.87 29.10 0.11 0.50 15 10 C -0.03 -1.19 5.07 -19.86 -0.10 -1.30 15 11 C -0.09 -2.55 9.68 22.27 0.22 -2.33 15 12 C -0.06 -1.04 10.05 22.27 0.22 -0.81 15 13 C -0.07 -1.09 9.67 22.27 0.22 -0.87 15 14 C -0.15 -4.22 5.37 -19.87 -0.11 -4.33 15 15 C 0.29 7.27 5.10 71.24 0.36 7.63 15 16 F -0.21 -7.29 16.36 44.97 0.74 -6.55 15 17 F -0.21 -6.55 16.40 44.97 0.74 -5.81 15 18 C -0.03 -1.16 5.99 36.37 0.22 -0.94 15 19 N 0.03 1.24 2.26 -46.46 -0.10 1.13 15 20 O -0.15 -7.48 18.61 18.89 0.35 -7.13 15 21 O -0.17 -9.30 18.66 18.89 0.35 -8.94 15 22 H 0.27 16.02 8.31 -92.71 -0.77 15.25 15 23 H 0.06 2.77 7.11 -2.39 -0.02 2.76 15 24 H 0.00 0.23 6.95 -2.39 -0.02 0.21 15 25 H 0.16 3.80 8.06 -2.92 -0.02 3.77 15 26 H 0.20 1.06 8.06 -2.91 -0.02 1.03 15 27 H 0.21 0.73 7.95 -2.91 -0.02 0.70 15 28 H 0.20 2.10 7.88 -2.39 -0.02 2.09 15 Total: -1.00 -84.60 266.68 7.26 -77.34 By element: Atomic # 1 Polarization: -7.35 SS G_CDS: 1.15 Total: -6.20 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 1.85 Total: -31.58 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.19 Total: -58.04 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.70 Total: -16.08 kcal Atomic # 9 Polarization: -13.84 SS G_CDS: 1.47 Total: -12.36 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -84.60 7.26 -77.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085663.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.720 kcal (2) G-P(sol) polarization free energy of solvation -84.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds