Wall clock time and date at job start Mon Mar 30 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86792 * 120.00210 * 2 1 4 4 H 1.48500 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47202 * 300.00847 * 3 2 1 6 6 H 1.48506 * 109.47198 * 60.00315 * 3 2 1 7 7 C 1.37886 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99863 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.38260 * 119.99875 * 270.27600 * 10 9 7 12 12 C 1.38212 * 119.99579 * 180.27779 * 11 10 9 13 13 C 1.38254 * 120.00039 * 359.47051 * 12 11 10 14 14 N 1.48022 * 120.00232 * 180.27365 * 13 12 11 15 15 O 1.21807 * 119.99458 * 37.51451 * 14 13 12 16 16 O 1.21798 * 120.00560 * 217.51325 * 14 13 12 17 17 C 1.38216 * 120.00301 * 0.25266 * 13 12 11 18 18 C 1.50696 * 120.00237 * 180.02562 * 17 13 12 19 19 F 1.39903 * 109.47036 * 42.74918 * 18 17 13 20 20 F 1.39902 * 109.46985 * 162.74185 * 18 17 13 21 21 C 1.38214 * 119.99747 * 90.00076 * 10 9 7 22 22 H 0.96994 * 120.00258 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47298 * 60.00264 * 9 7 2 24 24 H 1.09000 * 109.47501 * 300.00314 * 9 7 2 25 25 H 1.07996 * 120.00365 * 0.02562 * 11 10 9 26 26 H 1.07998 * 120.00121 * 179.74042 * 12 11 10 27 27 H 1.08998 * 109.47283 * 282.74570 * 18 17 13 28 28 H 1.07994 * 120.00011 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.6839 -4.1663 -1.1979 12 6 3.5776 -5.2206 -1.1979 13 6 4.0264 -5.7464 -0.0005 14 7 4.9882 -6.8715 -0.0005 15 8 5.8724 -6.9168 -0.8369 16 8 4.8954 -7.7520 0.8360 17 6 3.5773 -5.2211 1.1965 18 6 4.0670 -5.7938 2.5015 19 9 5.4441 -6.0268 2.4211 20 9 3.8071 -4.8876 3.5352 21 6 2.6793 -4.1699 1.1965 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6246 -2.5572 0.8896 25 1 2.3367 -3.7527 -2.1332 26 1 3.9287 -5.6309 -2.1331 27 1 3.5508 -6.7325 2.7029 28 1 2.3281 -3.7597 2.1317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396085756.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:10 Heat of formation + Delta-G solvation = -102.919328 kcal Electronic energy + Delta-G solvation = -18755.150345 eV Core-core repulsion = 15216.311611 eV Total energy + Delta-G solvation = -3538.838734 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.26893 -48.28637 -43.32063 -40.67591 -37.72008 -35.82904 -33.92663 -33.18141 -30.15562 -28.04536 -26.77573 -24.91514 -23.66592 -22.34247 -20.42786 -19.89536 -18.92519 -18.70110 -18.60594 -18.16034 -17.95147 -16.67428 -16.40634 -15.70386 -15.66596 -15.06308 -14.78675 -14.60968 -14.25548 -14.07241 -13.52521 -13.48011 -13.12743 -12.81603 -12.69695 -12.63433 -12.36352 -12.28736 -12.16891 -11.72060 -11.68399 -10.66249 -10.46888 -10.23982 -8.28510 -6.40493 -1.15259 -0.22659 0.09272 0.24916 1.38070 1.41741 1.51918 2.10662 2.32459 2.40125 2.95455 3.05342 3.08494 3.48277 3.71663 3.81399 3.85359 4.00781 4.13328 4.41354 4.63509 4.87672 5.00403 5.08546 5.26088 5.43579 5.59643 5.65822 6.02795 6.45261 6.71352 7.29405 8.81443 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.027861 B = 0.005747 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.746144 B = 4871.254695 C = 5275.982526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.001 4.001 11 C -0.097 4.097 12 C -0.046 4.046 13 C -0.047 4.047 14 N 0.032 4.968 15 O -0.173 6.173 16 O -0.154 6.154 17 C -0.116 4.116 18 C 0.309 3.691 19 F -0.207 7.207 20 F -0.196 7.196 21 C -0.089 4.089 22 H 0.268 0.732 23 H 0.029 0.971 24 H 0.022 0.978 25 H 0.166 0.834 26 H 0.175 0.825 27 H 0.173 0.827 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -10.657 0.655 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.012 3.988 10 C -0.002 4.002 11 C -0.115 4.115 12 C -0.065 4.065 13 C -0.129 4.129 14 N 0.553 4.447 15 O -0.387 6.387 16 O -0.374 6.374 17 C -0.118 4.118 18 C 0.256 3.744 19 F -0.189 7.189 20 F -0.177 7.177 21 C -0.108 4.108 22 H 0.077 0.923 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.183 0.817 26 H 0.192 0.808 27 H 0.190 0.810 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.173 -9.976 0.663 10.833 hybrid contribution 0.527 0.859 0.142 1.017 sum 4.700 -9.117 0.805 10.288 Atomic orbital electron populations 1.70026 1.07369 1.28129 1.50490 1.25744 0.95642 1.02637 0.94377 0.85494 0.78926 0.79322 0.77923 1.19263 1.20165 1.20497 1.21292 0.93138 0.90795 1.52009 0.92573 1.18308 0.92671 0.89633 0.98227 1.20925 0.93526 0.92924 0.92794 1.21447 0.96063 0.94298 0.99736 1.21151 0.94495 0.94329 0.96485 1.20710 1.00352 0.95017 0.96810 1.43634 1.00507 1.01355 0.99206 1.94529 1.26970 1.83677 1.33511 1.94473 1.78636 1.31524 1.32743 1.20293 0.99628 0.98624 0.93228 1.20745 0.78100 0.93418 0.82177 1.93015 1.34118 1.95190 1.96545 1.93009 1.93637 1.70798 1.60258 1.21028 0.95784 0.93559 1.00396 0.92341 0.95245 0.95968 0.81675 0.80779 0.81043 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.35 13.29 21.45 0.28 -50.06 15 2 C 0.02 0.82 5.46 84.66 0.46 1.28 15 3 Si 0.96 41.04 29.54 68.60 2.03 43.06 15 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 5 H -0.28 -11.53 7.11 99.48 0.71 -10.83 15 6 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15 7 C -0.53 -26.86 9.09 25.60 0.23 -26.63 15 8 H 0.06 2.81 7.74 -2.91 -0.02 2.79 15 9 C 0.05 2.15 5.10 29.10 0.15 2.30 15 10 C 0.00 -0.05 5.07 -19.86 -0.10 -0.15 15 11 C -0.10 -2.83 9.70 22.27 0.22 -2.62 15 12 C -0.05 -1.20 9.67 22.27 0.22 -0.99 15 13 C -0.05 -1.37 6.38 36.37 0.23 -1.14 15 14 N 0.03 0.99 3.70 -46.46 -0.17 0.82 15 15 O -0.17 -5.53 18.95 18.88 0.36 -5.17 15 16 O -0.15 -4.65 16.03 18.89 0.30 -4.35 15 17 C -0.12 -3.41 5.70 -19.87 -0.11 -3.53 15 18 C 0.31 8.15 4.60 71.23 0.33 8.48 15 19 F -0.21 -6.38 14.74 44.97 0.66 -5.72 15 20 F -0.20 -5.54 16.17 44.97 0.73 -4.81 15 21 C -0.09 -2.88 9.07 22.27 0.20 -2.68 15 22 H 0.27 13.82 8.31 -92.71 -0.77 13.05 15 23 H 0.03 1.35 8.09 -2.39 -0.02 1.34 15 24 H 0.02 1.05 8.08 -2.39 -0.02 1.03 15 25 H 0.17 4.26 8.06 -2.91 -0.02 4.24 15 26 H 0.17 3.57 8.01 -2.91 -0.02 3.55 15 27 H 0.17 3.30 7.88 -2.39 -0.02 3.28 15 28 H 0.15 4.88 7.32 -2.91 -0.02 4.86 15 Total: -1.00 -57.49 267.07 7.21 -50.28 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: 1.20 Total: 1.63 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 1.82 Total: -25.67 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.11 Total: -49.24 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.66 Total: -9.52 kcal Atomic # 9 Polarization: -11.92 SS G_CDS: 1.39 Total: -10.54 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -57.49 7.21 -50.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085756.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.640 kcal (2) G-P(sol) polarization free energy of solvation -57.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds