Wall clock time and date at job start Mon Mar 30 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00231 * 2 1 4 4 H 1.48497 * 109.47135 * 239.99875 * 3 2 1 5 5 H 1.48498 * 109.47061 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47009 * 119.99760 * 3 2 1 7 7 C 1.37881 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47408 * 180.02562 * 9 7 2 11 11 C 1.38255 * 120.00248 * 90.00045 * 10 9 7 12 12 C 1.38213 * 120.00232 * 179.97438 * 11 10 9 13 13 C 1.50706 * 119.99877 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.46715 * 209.99681 * 13 12 11 15 15 F 1.39897 * 109.47068 * 329.99592 * 13 12 11 16 16 C 1.38252 * 119.99994 * 0.26894 * 12 11 10 17 17 C 1.38210 * 119.99801 * 359.52348 * 16 12 11 18 18 N 1.48028 * 120.00062 * 180.25088 * 17 16 12 19 19 O 1.21803 * 119.99817 * 180.20107 * 18 17 16 20 20 O 1.21798 * 119.99566 * 0.20506 * 18 17 16 21 21 C 1.38218 * 119.99956 * 270.02141 * 10 9 7 22 22 H 0.97004 * 119.99732 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47315 * 60.00038 * 9 7 2 24 24 H 1.08999 * 109.47099 * 300.00445 * 9 7 2 25 25 H 1.08009 * 120.00039 * 0.02562 * 11 10 9 26 26 H 1.09000 * 109.47161 * 89.99837 * 13 12 11 27 27 H 1.07997 * 120.00071 * 179.72651 * 16 12 11 28 28 H 1.07991 * 119.99860 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6795 -4.1701 1.1968 12 6 3.5772 -5.2210 1.1968 13 6 4.0664 -5.7941 2.5019 14 9 5.3618 -6.2952 2.3347 15 9 4.0767 -4.7910 3.4770 16 6 4.0303 -5.7431 -0.0005 17 6 3.5779 -5.2206 -1.1975 18 7 4.0587 -5.7833 -2.4794 19 8 3.6629 -5.3204 -3.5342 20 8 4.8501 -6.7091 -2.4794 21 6 2.6797 -4.1696 -1.1975 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.3283 -3.7599 2.1322 26 1 3.4029 -6.5998 2.8164 27 1 4.7351 -6.5614 -0.0005 28 1 2.3287 -3.7592 -2.1328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396086736.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:21 Heat of formation + Delta-G solvation = -108.296485 kcal Electronic energy + Delta-G solvation = -18389.722121 eV Core-core repulsion = 14850.650216 eV Total energy + Delta-G solvation = -3539.071905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.05221 -48.07087 -43.34081 -40.71106 -37.75406 -35.78651 -33.78604 -33.57889 -29.46753 -27.76180 -27.42760 -25.53533 -23.18535 -22.23788 -19.97682 -19.84689 -18.75383 -18.56813 -18.44972 -18.18733 -17.84305 -17.24026 -16.61315 -16.41798 -14.88513 -14.78557 -14.71288 -14.39291 -14.19581 -13.83385 -13.55102 -13.31043 -13.27013 -12.85475 -12.77336 -12.62018 -12.43980 -12.35790 -12.11029 -11.74391 -11.70623 -10.68082 -10.64256 -10.11822 -8.28373 -6.40888 -1.28416 -0.25860 0.23972 0.25960 1.39657 1.40397 1.48334 2.09130 2.38209 2.53946 3.05661 3.12973 3.27001 3.46944 3.70186 3.77175 3.89944 3.98008 4.15419 4.45988 4.57476 4.82504 4.90159 5.05814 5.23787 5.38805 5.54964 5.64749 6.02936 6.45862 6.70069 7.28889 8.81127 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.006909 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.366871 B = 4051.718224 C = 5271.481952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.056 3.944 10 C -0.049 4.049 11 C -0.033 4.033 12 C -0.161 4.161 13 C 0.324 3.676 14 F -0.203 7.203 15 F -0.205 7.205 16 C -0.036 4.036 17 C -0.053 4.053 18 N 0.034 4.966 19 O -0.198 6.198 20 O -0.148 6.148 21 C -0.049 4.049 22 H 0.268 0.732 23 H 0.017 0.983 24 H 0.029 0.971 25 H 0.158 0.842 26 H 0.180 0.820 27 H 0.178 0.822 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -12.247 5.300 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.073 0.927 9 C 0.019 3.981 10 C -0.049 4.049 11 C -0.051 4.051 12 C -0.162 4.162 13 C 0.271 3.729 14 F -0.184 7.184 15 F -0.186 7.186 16 C -0.055 4.055 17 C -0.136 4.136 18 N 0.551 4.449 19 O -0.405 6.405 20 O -0.370 6.370 21 C -0.069 4.069 22 H 0.077 0.923 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.175 0.825 26 H 0.197 0.803 27 H 0.195 0.805 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.721 -11.811 5.886 14.383 hybrid contribution 0.327 1.122 -0.706 1.365 sum 6.048 -10.689 5.180 13.330 Atomic orbital electron populations 1.70021 1.07396 1.28262 1.50342 1.25759 0.95662 1.02681 0.94305 0.85611 0.78449 0.78683 0.79052 1.19774 1.20564 1.19204 1.21276 0.93086 0.91067 1.52240 0.92717 1.18188 0.92468 0.89516 0.97932 1.20375 0.97455 0.95741 0.91370 1.21469 0.92435 0.91650 0.99522 1.20565 1.01119 0.99475 0.95088 1.20625 0.81927 0.87857 0.82511 1.93004 1.41973 1.87653 1.95769 1.93018 1.96681 1.64502 1.64370 1.20763 0.97080 0.99364 0.88274 1.21007 1.06511 1.02754 0.83332 1.43732 0.98687 0.99325 1.03193 1.94564 1.61733 1.63979 1.20252 1.94461 1.28460 1.19727 1.94315 1.21059 0.92999 0.91906 1.00887 0.92319 0.96486 0.95280 0.82465 0.80302 0.80512 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.58 13.29 21.45 0.28 -51.29 15 2 C 0.02 0.84 5.46 84.66 0.46 1.30 15 3 Si 0.96 41.92 29.54 68.60 2.03 43.95 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.27 -11.30 7.11 99.48 0.71 -10.60 15 7 C -0.54 -27.97 9.09 25.60 0.23 -27.74 15 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 9 C 0.06 2.58 5.10 29.10 0.15 2.73 15 10 C -0.05 -1.78 5.07 -19.87 -0.10 -1.88 15 11 C -0.03 -0.97 9.05 22.27 0.20 -0.76 15 12 C -0.16 -3.83 5.74 -19.87 -0.11 -3.95 15 13 C 0.32 5.70 5.65 71.24 0.40 6.10 15 14 F -0.20 -4.07 16.48 44.97 0.74 -3.33 15 15 F -0.20 -4.60 16.48 44.97 0.74 -3.86 15 16 C -0.04 -0.91 8.91 22.27 0.20 -0.71 15 17 C -0.05 -1.67 6.85 36.37 0.25 -1.42 15 18 N 0.03 1.14 4.45 -46.46 -0.21 0.93 15 19 O -0.20 -7.25 18.45 18.88 0.35 -6.91 15 20 O -0.15 -4.70 18.45 18.89 0.35 -4.36 15 21 C -0.05 -1.74 9.21 22.27 0.21 -1.53 15 22 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 23 H 0.02 0.84 8.09 -2.38 -0.02 0.82 15 24 H 0.03 1.38 8.08 -2.39 -0.02 1.36 15 25 H 0.16 4.37 7.60 -2.91 -0.02 4.35 15 26 H 0.18 1.43 8.14 -2.39 -0.02 1.41 15 27 H 0.18 3.65 7.15 -2.91 -0.02 3.63 15 28 H 0.14 5.29 7.61 -2.91 -0.02 5.27 15 Total: -1.00 -59.99 271.33 7.37 -52.61 By element: Atomic # 1 Polarization: -1.09 SS G_CDS: 1.20 Total: 0.11 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 1.89 Total: -27.86 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.08 Total: -50.36 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.70 Total: -11.26 kcal Atomic # 9 Polarization: -8.67 SS G_CDS: 1.48 Total: -7.19 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -59.99 7.37 -52.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396086736.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.685 kcal (2) G-P(sol) polarization free energy of solvation -59.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds