Wall clock time and date at job start Mon Mar 30 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48500 * 109.47014 * 270.00194 * 3 2 1 5 5 H 1.48494 * 109.47040 * 29.99804 * 3 2 1 6 6 H 1.48495 * 109.47307 * 150.00122 * 3 2 1 7 7 C 1.37881 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99922 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00250 * 179.97438 * 7 2 1 10 10 C 1.50703 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.38260 * 119.99683 * 100.86092 * 10 9 7 12 12 C 1.38219 * 119.99828 * 179.76515 * 11 10 9 13 13 C 1.38253 * 119.99820 * 0.48883 * 12 11 10 14 14 C 1.50694 * 120.00133 * 179.76758 * 13 12 11 15 15 F 1.39902 * 109.47085 * 30.01905 * 14 13 12 16 16 F 1.39900 * 109.47401 * 150.01842 * 14 13 12 17 17 C 1.38219 * 119.99949 * 359.78430 * 13 12 11 18 18 C 1.38208 * 120.00257 * 281.13423 * 10 9 7 19 19 N 1.48020 * 119.99592 * 0.02562 * 18 10 9 20 20 O 1.21801 * 119.99901 * 185.85338 * 19 18 10 21 21 O 1.21797 * 120.00458 * 5.85451 * 19 18 10 22 22 H 0.96997 * 119.99893 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.47281 * 300.00058 * 9 7 2 24 24 H 1.09001 * 109.47575 * 59.99940 * 9 7 2 25 25 H 1.07999 * 120.00086 * 0.02562 * 11 10 9 26 26 H 1.07994 * 120.00087 * 180.25828 * 12 11 10 27 27 H 1.09001 * 109.47469 * 270.01789 * 14 13 12 28 28 H 1.07997 * 120.00086 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6150 0.0013 11 6 4.4564 -3.1928 -1.1741 12 6 4.9217 -4.4944 -1.1720 13 6 4.9349 -5.2217 0.0037 14 6 5.4372 -6.6425 0.0051 15 9 6.4104 -6.7940 -0.9885 16 9 5.9953 -6.9386 1.2533 17 6 4.4871 -4.6459 1.1777 18 6 4.0267 -3.3423 1.1765 19 7 3.5465 -2.7258 2.4336 20 8 3.6563 -3.3268 3.4873 21 8 3.0417 -1.6175 2.4145 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6809 -0.8906 24 1 3.8752 -0.6797 0.8894 25 1 4.4426 -2.6258 -2.0932 26 1 5.2713 -4.9443 -2.0893 27 1 4.6077 -7.3214 -0.1923 28 1 4.4971 -5.2142 2.0960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396087296.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:24 Heat of formation + Delta-G solvation = -77.825991 kcal Electronic energy + Delta-G solvation = -18852.932721 eV Core-core repulsion = 15315.182115 eV Total energy + Delta-G solvation = -3537.750605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.21546 -47.22789 -41.50087 -39.25870 -35.90580 -33.97445 -32.23149 -31.62040 -29.14557 -26.21831 -25.60435 -22.78263 -22.24300 -20.88519 -18.65155 -17.94352 -17.68455 -17.27796 -17.14984 -16.66976 -16.51620 -15.34541 -15.16179 -14.26344 -14.09200 -13.95231 -13.56053 -13.23081 -12.94876 -12.65528 -12.27916 -12.05491 -11.84295 -11.33699 -10.82338 -10.68635 -10.58437 -10.31573 -10.18691 -9.76144 -9.58746 -9.39154 -8.73626 -8.62101 -6.15422 -4.13276 0.35963 0.99401 1.85474 2.09184 3.26088 3.36107 3.38189 3.39493 3.52010 3.93196 4.33608 4.37347 4.66889 4.69905 4.82057 5.01831 5.13990 5.22251 5.42367 5.64711 5.93261 6.03470 6.17564 6.49270 6.70041 6.94917 7.17367 7.50551 8.30125 8.45233 8.80690 9.42799 10.97010 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.030520 B = 0.006390 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.221781 B = 4380.878006 C = 4929.028691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.081 3.919 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.497 4.497 8 H 0.069 0.931 9 C -0.001 4.001 10 C 0.049 3.951 11 C -0.126 4.126 12 C -0.043 4.043 13 C -0.201 4.201 14 C 0.323 3.677 15 F -0.199 7.199 16 F -0.198 7.198 17 C -0.026 4.026 18 C -0.047 4.047 19 N 0.024 4.976 20 O -0.229 6.229 21 O -0.080 6.080 22 H 0.267 0.733 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.150 0.850 26 H 0.142 0.858 27 H 0.126 0.874 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.761 -10.385 -3.080 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.122 4.122 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.087 0.913 9 C -0.038 4.038 10 C 0.048 3.952 11 C -0.144 4.144 12 C -0.061 4.061 13 C -0.202 4.202 14 C 0.269 3.731 15 F -0.180 7.180 16 F -0.179 7.179 17 C -0.045 4.045 18 C -0.130 4.130 19 N 0.539 4.461 20 O -0.423 6.423 21 O -0.311 6.311 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.168 0.832 26 H 0.160 0.840 27 H 0.143 0.857 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.920 -10.735 -3.535 15.716 hybrid contribution 0.247 0.922 0.359 1.019 sum 11.167 -9.813 -3.177 15.202 Atomic orbital electron populations 1.69863 1.06337 1.27354 1.49278 1.24830 0.94638 0.98963 0.93776 0.86776 0.80805 0.83536 0.78272 1.20368 1.20906 1.18618 1.20465 0.86505 0.94765 1.51709 0.91310 1.19370 0.98810 0.86296 0.99352 1.20545 0.86170 0.98956 0.89558 1.21176 1.00205 0.94918 0.98115 1.21232 0.93660 0.93905 0.97295 1.20119 1.08741 0.96550 0.94813 1.20183 0.86540 0.94404 0.71954 1.92994 1.66608 1.96648 1.61764 1.93011 1.87475 1.94391 1.43068 1.20575 0.92426 0.92482 0.98983 1.20832 1.11012 0.95146 0.86039 1.43365 0.99582 1.01340 1.01828 1.94443 1.63782 1.64851 1.19213 1.94695 1.39437 1.04099 1.92877 0.92290 0.94965 0.91866 0.83245 0.83981 0.85706 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.58 15 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 15 3 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.26 -5.94 6.54 56.52 0.37 -5.57 15 7 C -0.50 -13.27 7.98 -34.44 -0.27 -13.54 15 8 H 0.07 2.03 7.98 -52.49 -0.42 1.62 15 9 C 0.00 -0.03 3.47 -29.04 -0.10 -0.13 15 10 C 0.05 0.94 5.08 -104.62 -0.53 0.40 15 11 C -0.13 -1.88 9.67 -39.58 -0.38 -2.26 15 12 C -0.04 -0.53 9.40 -39.58 -0.37 -0.90 15 13 C -0.20 -2.58 5.73 -104.63 -0.60 -3.18 15 14 C 0.32 3.30 5.65 36.00 0.20 3.50 15 15 F -0.20 -2.15 16.48 2.25 0.04 -2.11 15 16 F -0.20 -2.37 16.48 2.25 0.04 -2.33 15 17 C -0.03 -0.40 8.91 -39.58 -0.35 -0.75 15 18 C -0.05 -0.90 6.81 -79.95 -0.54 -1.44 15 19 N 0.02 0.52 4.45 33.96 0.15 0.67 15 20 O -0.23 -4.93 18.46 -29.46 -0.54 -5.47 15 21 O -0.08 -1.94 14.18 -29.46 -0.42 -2.36 15 22 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 23 H 0.03 0.66 7.43 -51.92 -0.39 0.28 15 24 H 0.06 1.48 5.22 -51.93 -0.27 1.21 15 25 H 0.15 1.92 8.03 -52.49 -0.42 1.50 15 26 H 0.14 1.30 7.60 -52.49 -0.40 0.90 15 27 H 0.13 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.15 2.20 7.17 -52.49 -0.38 1.82 15 LS Contribution 260.31 15.07 3.92 3.92 Total: -1.00 -30.72 260.31 -5.62 -36.35 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -1.86 Total: -2.97 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -3.05 Total: -16.15 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 0.92 Total: -24.91 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.96 Total: -7.83 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.72 -5.62 -36.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396087296.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.478 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds