Wall clock time and date at job start Mon Mar 30 2020 06:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48500 * 109.47014 * 270.00194 * 3 2 1 5 5 H 1.48494 * 109.47040 * 29.99804 * 3 2 1 6 6 H 1.48495 * 109.47307 * 150.00122 * 3 2 1 7 7 C 1.37881 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99922 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00250 * 179.97438 * 7 2 1 10 10 C 1.50703 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.38260 * 119.99683 * 100.86092 * 10 9 7 12 12 C 1.38219 * 119.99828 * 179.76515 * 11 10 9 13 13 C 1.38253 * 119.99820 * 0.48883 * 12 11 10 14 14 C 1.50694 * 120.00133 * 179.76758 * 13 12 11 15 15 F 1.39902 * 109.47085 * 30.01905 * 14 13 12 16 16 F 1.39900 * 109.47401 * 150.01842 * 14 13 12 17 17 C 1.38219 * 119.99949 * 359.78430 * 13 12 11 18 18 C 1.38208 * 120.00257 * 281.13423 * 10 9 7 19 19 N 1.48020 * 119.99592 * 0.02562 * 18 10 9 20 20 O 1.21801 * 119.99901 * 185.85338 * 19 18 10 21 21 O 1.21797 * 120.00458 * 5.85451 * 19 18 10 22 22 H 0.96997 * 119.99893 * 359.97438 * 1 2 3 23 23 H 1.09009 * 109.47281 * 300.00058 * 9 7 2 24 24 H 1.09001 * 109.47575 * 59.99940 * 9 7 2 25 25 H 1.07999 * 120.00086 * 0.02562 * 11 10 9 26 26 H 1.07994 * 120.00087 * 180.25828 * 12 11 10 27 27 H 1.09001 * 109.47469 * 270.01789 * 14 13 12 28 28 H 1.07997 * 120.00086 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0138 -2.6150 0.0013 11 6 4.4564 -3.1928 -1.1741 12 6 4.9217 -4.4944 -1.1720 13 6 4.9349 -5.2217 0.0037 14 6 5.4372 -6.6425 0.0051 15 9 6.4104 -6.7940 -0.9885 16 9 5.9953 -6.9386 1.2533 17 6 4.4871 -4.6459 1.1777 18 6 4.0267 -3.3423 1.1765 19 7 3.5465 -2.7258 2.4336 20 8 3.6563 -3.3268 3.4873 21 8 3.0417 -1.6175 2.4145 22 1 -0.4850 0.8400 0.0004 23 1 3.8745 -0.6809 -0.8906 24 1 3.8752 -0.6797 0.8894 25 1 4.4426 -2.6258 -2.0932 26 1 5.2713 -4.9443 -2.0893 27 1 4.6077 -7.3214 -0.1923 28 1 4.4971 -5.2142 2.0960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396087296.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:23 Heat of formation + Delta-G solvation = -96.164176 kcal Electronic energy + Delta-G solvation = -18853.727924 eV Core-core repulsion = 15315.182115 eV Total energy + Delta-G solvation = -3538.545808 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.065 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.04237 -48.05901 -43.13876 -40.57217 -37.61274 -35.62613 -33.98727 -32.93100 -30.70978 -27.61315 -27.04129 -24.24806 -23.71972 -22.34152 -20.03826 -19.47942 -19.12171 -18.47990 -18.33319 -18.16982 -17.76201 -16.81834 -16.43641 -15.99273 -15.26547 -14.84396 -14.65165 -14.45509 -14.37216 -14.06746 -13.86263 -13.46210 -13.07391 -12.64903 -12.59637 -12.42194 -12.11780 -12.01321 -11.94412 -11.67052 -11.44163 -10.71548 -10.62356 -10.09431 -8.26461 -6.28343 -1.11876 -0.21697 0.34643 0.57821 1.37149 1.44034 1.53558 2.16449 2.39683 2.56053 3.10905 3.15081 3.33632 3.47110 3.73608 3.78469 3.89926 4.00947 4.22410 4.50303 4.61058 4.83877 4.90374 4.95372 5.22322 5.32735 5.45957 5.63218 6.16541 6.65298 6.71901 7.32273 8.90399 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.030520 B = 0.006390 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.221781 B = 4380.878006 C = 4929.028691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.020 3.980 3 Si 0.943 3.057 4 H -0.257 1.257 5 H -0.288 1.288 6 H -0.251 1.251 7 C -0.489 4.489 8 H 0.022 0.978 9 C 0.003 3.997 10 C 0.018 3.982 11 C -0.123 4.123 12 C -0.017 4.017 13 C -0.185 4.185 14 C 0.327 3.673 15 F -0.198 7.198 16 F -0.208 7.208 17 C -0.028 4.028 18 C -0.071 4.071 19 N 0.027 4.973 20 O -0.202 6.202 21 O -0.158 6.158 22 H 0.267 0.733 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.173 0.827 26 H 0.189 0.811 27 H 0.172 0.828 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.406 -12.386 -4.805 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.181 1.181 5 H -0.214 1.214 6 H -0.175 1.175 7 C -0.527 4.527 8 H 0.041 0.959 9 C -0.034 4.034 10 C 0.017 3.983 11 C -0.141 4.141 12 C -0.034 4.034 13 C -0.187 4.187 14 C 0.274 3.726 15 F -0.179 7.179 16 F -0.189 7.189 17 C -0.047 4.047 18 C -0.155 4.155 19 N 0.537 4.463 20 O -0.408 6.408 21 O -0.373 6.373 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.191 0.809 26 H 0.206 0.794 27 H 0.188 0.812 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 13.537 -12.617 -5.331 19.258 hybrid contribution -0.438 1.179 0.915 1.555 sum 13.100 -11.438 -4.415 17.942 Atomic orbital electron populations 1.70020 1.08274 1.28181 1.52318 1.25729 0.95358 1.02926 0.93746 0.85765 0.79591 0.78675 0.79311 1.18117 1.21434 1.17517 1.20578 0.89138 0.92719 1.50306 0.95927 1.19128 0.95730 0.89181 0.99372 1.20474 0.88793 0.97791 0.91290 1.21489 0.99191 0.96240 0.97169 1.21732 0.90584 0.92345 0.98774 1.20571 1.06348 0.98009 0.93745 1.20509 0.87541 0.93079 0.71499 1.93005 1.66823 1.96478 1.61613 1.93003 1.87745 1.94267 1.43926 1.20780 0.92251 0.90930 1.00760 1.21080 1.13228 0.96700 0.84490 1.43872 0.98534 1.00965 1.02888 1.94376 1.61842 1.64056 1.20517 1.94714 1.43235 1.05827 1.93502 0.92414 0.92944 0.93457 0.80929 0.79383 0.81162 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.02 13.96 21.45 0.30 -58.72 15 2 C 0.02 1.15 5.47 84.66 0.46 1.61 15 3 Si 0.94 43.76 27.47 68.60 1.88 45.64 15 4 H -0.26 -10.93 7.11 99.48 0.71 -10.22 15 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 15 6 H -0.25 -11.10 6.54 99.48 0.65 -10.45 15 7 C -0.49 -27.35 7.98 25.60 0.20 -27.15 15 8 H 0.02 1.42 7.98 -2.91 -0.02 1.40 15 9 C 0.00 0.13 3.47 29.10 0.10 0.23 15 10 C 0.02 0.67 5.08 -19.87 -0.10 0.57 15 11 C -0.12 -3.27 9.67 22.27 0.22 -3.05 15 12 C -0.02 -0.33 9.40 22.27 0.21 -0.12 15 13 C -0.19 -3.93 5.73 -19.87 -0.11 -4.04 15 14 C 0.33 4.92 5.65 71.23 0.40 5.33 15 15 F -0.20 -3.16 16.48 44.97 0.74 -2.42 15 16 F -0.21 -4.12 16.48 44.97 0.74 -3.38 15 17 C -0.03 -0.81 8.91 22.27 0.20 -0.61 15 18 C -0.07 -2.71 6.81 36.37 0.25 -2.46 15 19 N 0.03 1.22 4.45 -46.47 -0.21 1.01 15 20 O -0.20 -8.73 18.46 18.88 0.35 -8.38 15 21 O -0.16 -8.20 14.18 18.89 0.27 -7.93 15 22 H 0.27 15.56 8.31 -92.71 -0.77 14.79 15 23 H 0.05 2.11 7.43 -2.38 -0.02 2.10 15 24 H 0.05 2.29 5.22 -2.39 -0.01 2.27 15 25 H 0.17 3.75 8.03 -2.91 -0.02 3.73 15 26 H 0.19 2.08 7.60 -2.91 -0.02 2.06 15 27 H 0.17 1.22 8.14 -2.39 -0.02 1.20 15 28 H 0.16 4.29 7.17 -2.91 -0.02 4.27 15 Total: -1.00 -72.56 260.31 7.06 -65.51 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: 1.15 Total: -1.63 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 1.83 Total: -29.69 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.09 Total: -57.71 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.62 Total: -16.31 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.48 Total: -5.80 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -72.56 7.06 -65.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396087296.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.657 kcal (2) G-P(sol) polarization free energy of solvation -72.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds