Wall clock time and date at job start Mon Mar 30 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99801 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99948 * 3 2 1 7 7 C 1.40431 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.39975 * 119.99758 * 0.02562 * 7 2 1 10 10 N 1.32369 * 125.13039 * 359.69397 * 9 7 2 11 11 C 1.34161 * 108.90317 * 179.82956 * 10 9 7 12 12 C 1.40379 * 133.56430 * 180.08684 * 11 10 9 13 13 C 1.36461 * 119.79466 * 180.32465 * 12 11 10 14 14 C 1.38959 * 120.63832 * 0.04073 * 13 12 11 15 15 C 1.50697 * 119.69334 * 180.02562 * 14 13 12 16 16 F 1.39906 * 109.47046 * 269.97798 * 15 14 13 17 17 F 1.39899 * 109.47695 * 29.98016 * 15 14 13 18 18 F 1.39898 * 109.46850 * 149.98228 * 15 14 13 19 19 C 1.38102 * 120.60496 * 359.97438 * 14 13 12 20 20 C 1.38493 * 119.81378 * 359.97438 * 19 14 13 21 21 O 1.35086 * 125.12987 * 179.97438 * 9 7 2 22 22 H 0.97000 * 120.00713 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.10366 * 0.36763 * 12 11 10 24 24 H 1.07996 * 119.68209 * 180.02562 * 13 12 11 25 25 H 1.07996 * 120.09598 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6993 1.3465 0.0006 5 1 1.8806 2.3964 -1.2125 6 1 1.8806 2.3965 1.2125 7 6 2.0076 -1.2161 0.0005 8 1 3.0876 -1.2161 0.0001 9 6 1.3077 -2.4284 0.0005 10 7 -0.0106 -2.5467 0.0058 11 6 -0.3300 -3.8498 0.0002 12 6 -1.5483 -4.5472 0.0004 13 6 -1.5484 -5.9119 0.0002 14 6 -0.3528 -6.6201 0.0007 15 6 -0.3777 -8.1268 -0.0001 16 9 -0.3859 -8.5938 1.3187 17 9 -1.5273 -8.5740 -0.6602 18 9 0.7570 -8.6116 -0.6594 19 6 0.8579 -5.9557 0.0009 20 6 0.8835 -4.5711 0.0000 21 8 1.8759 -3.6539 0.0005 22 1 -0.4851 0.8400 -0.0004 23 1 -2.4826 -4.0056 0.0000 24 1 -2.4867 -6.4466 -0.0001 25 1 1.7822 -6.5144 0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396127888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:39 Heat of formation + Delta-G solvation = -131.908805 kcal Electronic energy + Delta-G solvation = -18263.734009 eV Core-core repulsion = 14600.177892 eV Total energy + Delta-G solvation = -3663.556117 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.72460 -47.25745 -47.18542 -41.55779 -37.17452 -34.44594 -32.94906 -29.99469 -29.88272 -27.45477 -24.45626 -22.44984 -21.24105 -20.75704 -18.17952 -18.06186 -18.05029 -17.44894 -16.66393 -15.61340 -15.20654 -14.96720 -14.16071 -14.10492 -13.78997 -13.68804 -13.48425 -13.38612 -13.24167 -13.15286 -12.48693 -12.01219 -11.73318 -11.52598 -11.43866 -11.10547 -10.64328 -10.49827 -10.40425 -9.61829 -8.59363 -8.07876 -7.66074 -7.16902 -5.19745 1.55450 2.12067 2.74857 2.80897 2.89190 3.14211 3.50698 3.55995 3.97118 4.36945 4.45509 4.65792 4.89497 5.02669 5.33086 5.44928 5.85756 6.05638 6.18157 6.50219 6.58717 6.70851 6.95146 7.13394 7.20636 7.53296 7.70038 7.95699 8.21594 9.42814 9.72079 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.056536 B = 0.004923 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.141652 B = 5685.752212 C = 6006.394165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.064 3.936 3 Si 0.938 3.062 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.390 4.390 8 H 0.106 0.894 9 C 0.353 3.647 10 N -0.544 5.544 11 C 0.135 3.865 12 C -0.141 4.141 13 C -0.056 4.056 14 C -0.264 4.264 15 C 0.521 3.479 16 F -0.187 7.187 17 F -0.185 7.185 18 F -0.186 7.186 19 C -0.019 4.019 20 C -0.073 4.073 21 O -0.253 6.253 22 H 0.290 0.710 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 -5.250 -0.022 5.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.166 4.166 3 Si 0.760 3.240 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.422 4.422 8 H 0.124 0.876 9 C 0.177 3.823 10 N -0.275 5.275 11 C 0.007 3.993 12 C -0.162 4.162 13 C -0.076 4.076 14 C -0.268 4.268 15 C 0.468 3.532 16 F -0.168 7.168 17 F -0.166 7.166 18 F -0.168 7.168 19 C -0.039 4.039 20 C -0.124 4.124 21 O -0.153 6.153 22 H 0.101 0.899 23 H 0.143 0.857 24 H 0.141 0.859 25 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.826 -4.525 -0.015 4.599 hybrid contribution 0.789 -0.212 -0.005 0.817 sum -0.036 -4.736 -0.020 4.737 Atomic orbital electron populations 1.69942 1.07610 1.30041 1.23747 1.26128 0.95285 1.01618 0.93527 0.85756 0.80493 0.78560 0.79225 1.17722 1.19061 1.19064 1.18756 0.95437 0.85735 1.42258 0.87573 1.22590 0.86646 0.83241 0.89867 1.71627 1.10495 1.12501 1.32916 1.20613 0.93573 0.91360 0.93787 1.19668 0.95646 0.92284 1.08644 1.20052 0.95868 0.93722 0.97920 1.18906 0.95228 0.89089 1.23579 1.18181 0.72780 0.89154 0.73129 1.93179 1.96162 1.90643 1.36838 1.93129 1.51087 1.91126 1.81297 1.93135 1.52219 1.90080 1.81349 1.19007 0.96704 0.89298 0.98864 1.20000 0.88375 0.91276 1.12779 1.84644 1.34843 1.16274 1.79542 0.89893 0.85715 0.85899 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.85 11.84 55.57 0.66 -16.19 15 2 C 0.06 1.46 5.50 -17.28 -0.10 1.36 15 3 Si 0.94 16.24 29.56 -169.99 -5.03 11.21 15 4 H -0.25 -4.27 7.11 56.52 0.40 -3.87 15 5 H -0.27 -4.52 7.11 56.52 0.40 -4.11 15 6 H -0.27 -4.52 7.11 56.52 0.40 -4.12 15 7 C -0.39 -9.56 9.46 -38.11 -0.36 -9.92 15 8 H 0.11 2.35 7.85 -52.49 -0.41 1.94 15 9 C 0.35 9.46 7.68 -16.67 -0.13 9.33 15 10 N -0.54 -14.92 9.37 -11.08 -0.10 -15.03 15 11 C 0.13 3.35 7.22 -84.93 -0.61 2.74 15 12 C -0.14 -2.97 10.07 -39.42 -0.40 -3.37 15 13 C -0.06 -1.03 9.32 -39.96 -0.37 -1.40 15 14 C -0.26 -4.98 5.47 -104.41 -0.57 -5.55 15 15 C 0.52 8.69 3.36 36.00 0.12 8.81 15 16 F -0.19 -3.08 17.30 2.25 0.04 -3.04 15 17 F -0.18 -2.93 16.43 2.25 0.04 -2.90 15 18 F -0.19 -3.07 16.44 2.25 0.04 -3.03 15 19 C -0.02 -0.40 9.40 -39.54 -0.37 -0.77 15 20 C -0.07 -1.76 7.43 -38.37 -0.29 -2.04 15 21 O -0.25 -6.50 10.83 1.20 0.01 -6.49 15 22 H 0.29 6.17 8.29 -40.82 -0.34 5.83 15 23 H 0.12 2.41 8.06 -52.49 -0.42 1.99 15 24 H 0.12 1.89 7.58 -52.49 -0.40 1.50 15 25 H 0.12 2.23 7.58 -52.49 -0.40 1.83 15 LS Contribution 247.37 15.07 3.73 3.73 Total: -1.00 -27.11 247.37 -4.46 -31.57 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -0.76 Total: 0.98 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.07 Total: -0.82 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.55 Total: -31.22 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: 0.01 Total: -6.49 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.11 Total: -8.97 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.11 -4.46 -31.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396127888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.343 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds