Wall clock time and date at job start Mon Mar 30 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86800 * 119.99758 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99801 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99948 * 3 2 1 7 7 C 1.40431 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00211 * 179.97438 * 7 2 1 9 9 C 1.39975 * 119.99758 * 0.02562 * 7 2 1 10 10 N 1.32369 * 125.13039 * 359.69397 * 9 7 2 11 11 C 1.34161 * 108.90317 * 179.82956 * 10 9 7 12 12 C 1.40379 * 133.56430 * 180.08684 * 11 10 9 13 13 C 1.36461 * 119.79466 * 180.32465 * 12 11 10 14 14 C 1.38959 * 120.63832 * 0.04073 * 13 12 11 15 15 C 1.50697 * 119.69334 * 180.02562 * 14 13 12 16 16 F 1.39906 * 109.47046 * 269.97798 * 15 14 13 17 17 F 1.39899 * 109.47695 * 29.98016 * 15 14 13 18 18 F 1.39898 * 109.46850 * 149.98228 * 15 14 13 19 19 C 1.38102 * 120.60496 * 359.97438 * 14 13 12 20 20 C 1.38493 * 119.81378 * 359.97438 * 19 14 13 21 21 O 1.35086 * 125.12987 * 179.97438 * 9 7 2 22 22 H 0.97000 * 120.00713 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.10366 * 0.36763 * 12 11 10 24 24 H 1.07996 * 119.68209 * 180.02562 * 13 12 11 25 25 H 1.07996 * 120.09598 * 180.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6178 0.0000 4 1 3.6993 1.3465 0.0006 5 1 1.8806 2.3964 -1.2125 6 1 1.8806 2.3965 1.2125 7 6 2.0076 -1.2161 0.0005 8 1 3.0876 -1.2161 0.0001 9 6 1.3077 -2.4284 0.0005 10 7 -0.0106 -2.5467 0.0058 11 6 -0.3300 -3.8498 0.0002 12 6 -1.5483 -4.5472 0.0004 13 6 -1.5484 -5.9119 0.0002 14 6 -0.3528 -6.6201 0.0007 15 6 -0.3777 -8.1268 -0.0001 16 9 -0.3859 -8.5938 1.3187 17 9 -1.5273 -8.5740 -0.6602 18 9 0.7570 -8.6116 -0.6594 19 6 0.8579 -5.9557 0.0009 20 6 0.8835 -4.5711 0.0000 21 8 1.8759 -3.6539 0.0005 22 1 -0.4851 0.8400 -0.0004 23 1 -2.4826 -4.0056 0.0000 24 1 -2.4867 -6.4466 -0.0001 25 1 1.7822 -6.5144 0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396127888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:39 Heat of formation + Delta-G solvation = -148.833670 kcal Electronic energy + Delta-G solvation = -18264.467926 eV Core-core repulsion = 14600.177892 eV Total energy + Delta-G solvation = -3664.290034 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.040 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.07244 -48.58850 -48.52762 -43.37731 -38.85357 -36.21746 -34.75441 -31.68645 -31.60380 -29.17616 -26.01341 -24.18707 -22.90524 -22.53510 -19.83459 -19.54055 -19.40308 -19.04564 -18.32838 -17.31019 -17.09637 -16.55035 -15.57049 -15.49551 -15.29967 -15.04783 -14.93466 -14.78518 -14.70961 -14.68523 -14.12738 -13.61424 -13.34947 -13.08963 -13.01207 -12.77847 -12.17763 -12.14378 -11.98310 -11.27379 -10.48052 -9.79044 -9.43855 -8.86534 -7.05595 -0.14505 0.43862 1.33525 1.37264 1.59355 1.69773 1.88732 2.05247 2.32873 2.67199 2.95497 3.12115 3.21913 3.56082 3.65297 3.86316 4.19451 4.41001 4.56073 4.81273 4.88005 5.03423 5.29774 5.37119 5.56037 5.76925 5.94410 6.15671 6.38864 7.57114 8.06707 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.056536 B = 0.004923 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.141652 B = 5685.752212 C = 6006.394165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.023 3.977 3 Si 1.023 2.977 4 H -0.244 1.244 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.414 4.414 8 H 0.120 0.880 9 C 0.321 3.679 10 N -0.582 5.582 11 C 0.096 3.904 12 C -0.146 4.146 13 C -0.042 4.042 14 C -0.253 4.253 15 C 0.534 3.466 16 F -0.181 7.181 17 F -0.174 7.174 18 F -0.182 7.182 19 C -0.018 4.018 20 C -0.104 4.104 21 O -0.267 6.267 22 H 0.300 0.700 23 H 0.138 0.862 24 H 0.164 0.836 25 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -5.954 -0.037 5.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.202 4.202 3 Si 0.839 3.161 4 H -0.167 1.167 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.446 4.446 8 H 0.138 0.862 9 C 0.144 3.856 10 N -0.316 5.316 11 C -0.029 4.029 12 C -0.167 4.167 13 C -0.061 4.061 14 C -0.256 4.256 15 C 0.480 3.520 16 F -0.163 7.163 17 F -0.156 7.156 18 F -0.164 7.164 19 C -0.037 4.037 20 C -0.155 4.155 21 O -0.168 6.168 22 H 0.111 0.889 23 H 0.155 0.845 24 H 0.181 0.819 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.968 -5.294 -0.029 5.382 hybrid contribution 0.724 -0.216 -0.001 0.756 sum -0.244 -5.511 -0.030 5.516 Atomic orbital electron populations 1.70012 1.09627 1.31795 1.24439 1.27332 0.96037 1.04882 0.91996 0.84559 0.79146 0.72853 0.79548 1.16695 1.18212 1.18228 1.19355 0.96403 0.86097 1.42787 0.86186 1.23146 0.87168 0.84048 0.91241 1.71519 1.11063 1.14118 1.34861 1.21114 0.95340 0.91101 0.95367 1.19977 0.94929 0.93424 1.08373 1.20464 0.97474 0.92753 0.95433 1.19278 0.94771 0.90771 1.20807 1.17729 0.73242 0.87613 0.73409 1.93199 1.96169 1.90377 1.36529 1.93160 1.50488 1.90830 1.81098 1.93155 1.52076 1.89841 1.81282 1.19334 0.98458 0.88028 0.97840 1.20445 0.87960 0.92359 1.14726 1.84581 1.35626 1.16525 1.80044 0.88875 0.84452 0.81854 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.93 11.84 21.91 0.26 -36.68 15 2 C 0.02 1.06 5.50 85.42 0.47 1.53 15 3 Si 1.02 32.88 29.56 68.60 2.03 34.90 15 4 H -0.24 -7.37 7.11 99.48 0.71 -6.66 15 5 H -0.26 -7.89 7.11 99.48 0.71 -7.19 15 6 H -0.26 -7.90 7.11 99.48 0.71 -7.20 15 7 C -0.41 -21.04 9.46 23.23 0.22 -20.82 15 8 H 0.12 5.46 7.85 -2.91 -0.02 5.44 15 9 C 0.32 18.02 7.68 85.03 0.65 18.68 15 10 N -0.58 -33.44 9.37 -302.09 -2.83 -36.27 15 11 C 0.10 4.93 7.22 40.03 0.29 5.22 15 12 C -0.15 -6.06 10.07 22.38 0.23 -5.83 15 13 C -0.04 -1.44 9.32 22.03 0.21 -1.23 15 14 C -0.25 -8.89 5.47 -19.72 -0.11 -8.99 15 15 C 0.53 15.94 3.36 71.24 0.24 16.18 15 16 F -0.18 -5.35 17.30 44.97 0.78 -4.57 15 17 F -0.17 -4.82 16.43 44.97 0.74 -4.08 15 18 F -0.18 -5.41 16.44 44.97 0.74 -4.67 15 19 C -0.02 -0.70 9.40 22.30 0.21 -0.49 15 20 C -0.10 -5.14 7.43 23.05 0.17 -4.97 15 21 O -0.27 -14.35 10.83 -18.62 -0.20 -14.55 15 22 H 0.30 13.07 8.29 -92.71 -0.77 12.30 15 23 H 0.14 5.23 8.06 -2.91 -0.02 5.21 15 24 H 0.16 4.30 7.58 -2.91 -0.02 4.28 15 25 H 0.14 4.99 7.58 -2.91 -0.02 4.97 15 Total: -1.00 -60.87 247.37 5.35 -55.52 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.26 Total: 11.14 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 2.57 Total: -0.74 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -2.57 Total: -72.94 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.20 Total: -14.55 kcal Atomic # 9 Polarization: -15.59 SS G_CDS: 2.26 Total: -13.33 kcal Atomic # 14 Polarization: 32.88 SS G_CDS: 2.03 Total: 34.90 kcal Total: -60.87 5.35 -55.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396127888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.313 kcal (2) G-P(sol) polarization free energy of solvation -60.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds