Wall clock time and date at job start Mon Mar 30 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47012 * 2 1 4 4 C 1.38680 * 119.87288 * 270.02403 * 3 2 1 5 5 C 1.37524 * 120.12487 * 179.46283 * 4 3 2 6 6 C 1.40048 * 120.48653 * 0.83749 * 5 4 3 7 7 S 1.75869 * 129.59955 * 179.14936 * 6 5 4 8 8 C 1.75170 * 92.83344 * 179.97438 * 7 6 5 9 9 C 1.43197 * 124.63237 * 180.02562 * 8 7 6 10 10 N 8.61673 * 107.66310 * 26.63525 * 2 1 3 11 11 C 1.38641 * 110.72907 * 0.02562 * 8 7 6 12 12 C 1.39673 * 123.34443 * 179.97438 * 11 8 7 13 13 H 1.08000 * 119.99737 * 322.66590 * 12 11 8 14 14 C 1.40435 * 120.00007 * 142.67821 * 12 11 8 15 15 N 1.30603 * 119.99976 * 336.18589 * 14 12 11 16 16 Si 1.86801 * 120.00075 * 155.91515 * 14 12 11 17 17 H 1.48505 * 109.47097 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47421 * 119.99657 * 16 14 12 19 19 H 1.48502 * 109.47235 * 240.00063 * 16 14 12 20 20 C 1.39292 * 119.59229 * 359.37833 * 6 5 4 21 21 C 1.37325 * 119.86953 * 90.00046 * 3 2 1 22 22 H 1.08995 * 109.47101 * 299.99728 * 1 2 3 23 23 H 1.09000 * 109.47391 * 59.99998 * 1 2 3 24 24 H 1.09005 * 109.46806 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46865 * 240.00007 * 2 1 3 26 26 H 1.08999 * 109.47309 * 120.00551 * 2 1 3 27 27 H 1.08003 * 119.94085 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.75385 * 179.97438 * 5 4 3 29 29 H 0.97000 * 120.00100 * 354.56301 * 15 14 12 30 30 H 1.08000 * 119.77203 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0722 -1.2025 5 6 2.7099 3.3725 -1.2086 6 6 2.9549 4.0452 -0.0050 7 16 3.5425 5.6806 0.2658 8 6 3.4842 5.5063 2.0078 9 6 3.8528 6.5282 2.9407 10 7 4.1445 7.3392 3.6808 11 6 3.0326 4.2436 2.3598 12 6 2.8853 3.8222 3.6833 13 1 3.6008 4.1310 4.4310 14 6 1.8071 2.9969 4.0415 15 7 0.7199 2.9919 3.3178 16 14 1.9307 1.9005 5.5489 17 1 3.2585 2.0852 6.1878 18 1 0.8619 2.2631 6.5138 19 1 1.7705 0.4810 5.1430 20 6 2.7298 3.3936 1.2054 21 6 2.2603 2.0656 1.1908 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0811 1.5602 -2.1361 28 1 2.8873 3.8739 -2.1486 29 1 0.6256 3.6143 2.5799 30 1 2.0788 1.5509 2.1227 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396211547.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:05 Heat of formation + Delta-G solvation = 22.700683 kcal Electronic energy + Delta-G solvation = -16051.020624 eV Core-core repulsion = 13514.611583 eV Total energy + Delta-G solvation = -2536.409041 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57739 -37.83492 -36.76691 -35.21727 -33.52867 -30.93246 -29.96974 -28.02521 -24.82587 -24.59343 -22.72599 -21.33659 -20.17437 -18.56212 -17.46188 -16.58568 -16.20468 -15.89479 -15.38785 -15.23160 -14.79160 -14.76326 -14.27521 -14.21885 -14.01224 -13.68901 -13.35992 -13.14762 -12.87503 -12.66804 -12.47812 -12.07467 -11.94912 -11.77031 -11.57117 -11.38976 -11.29099 -10.86223 -10.26281 -9.62231 -9.13705 -8.55814 -6.71419 -0.18344 0.41963 0.84214 1.13704 1.36168 1.47856 1.64634 1.76891 2.19125 2.36574 2.43783 2.71007 3.07912 3.58389 3.97820 4.02893 4.19651 4.37323 4.55287 4.61959 4.64308 4.74149 4.98987 5.10665 5.12467 5.18549 5.27484 5.33826 5.43651 5.48604 5.61325 5.74324 5.84231 6.11991 6.26011 6.46064 6.92167 7.73648 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.011631 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.729144 B = 2406.867604 C = 4141.210405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C -0.102 4.102 4 C -0.087 4.087 5 C -0.104 4.104 6 C -0.124 4.124 7 S 0.055 5.945 8 C -0.381 4.381 9 C 0.327 3.673 10 N -0.542 5.542 11 C 0.128 3.872 12 C -0.489 4.489 13 H 0.072 0.928 14 C 0.015 3.985 15 N -0.757 5.757 16 Si 1.109 2.891 17 H -0.271 1.271 18 H -0.265 1.265 19 H -0.245 1.245 20 C -0.101 4.101 21 C -0.070 4.070 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.066 0.934 27 H 0.165 0.835 28 H 0.148 0.852 29 H 0.288 0.712 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 -11.438 -8.728 14.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.105 4.105 4 C -0.107 4.107 5 C -0.127 4.127 6 C -0.240 4.240 7 S 0.313 5.687 8 C -0.501 4.501 9 C 0.021 3.979 10 N -0.226 5.226 11 C 0.116 3.884 12 C -0.519 4.519 13 H 0.090 0.910 14 C -0.208 4.208 15 N -0.376 5.376 16 Si 0.925 3.075 17 H -0.195 1.195 18 H -0.190 1.190 19 H -0.168 1.168 20 C -0.109 4.109 21 C -0.090 4.090 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.183 0.817 28 H 0.165 0.835 29 H 0.101 0.899 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.359 -10.060 -7.663 12.865 hybrid contribution 0.524 0.645 0.181 0.851 sum -1.834 -9.415 -7.482 12.165 Atomic orbital electron populations 1.21722 0.94434 1.02332 1.01548 1.20524 0.96380 0.90665 1.03644 1.20018 1.00342 0.97947 0.92200 1.21230 0.97615 0.93375 0.98482 1.20819 1.01494 0.95284 0.95145 1.22827 1.05651 0.98010 0.97482 1.82594 1.75704 1.11640 0.98727 1.18944 1.42608 0.95151 0.93381 1.24714 0.90335 0.91232 0.91639 1.80992 1.18702 1.12626 1.10237 1.17839 0.89076 0.88101 0.93363 1.20505 1.10956 1.26075 0.94398 0.91009 1.28481 0.90320 0.96980 1.04984 1.70431 1.24408 1.29655 1.13079 0.83103 0.77710 0.75806 0.70930 1.19539 1.18970 1.16807 1.19463 1.04179 0.95542 0.91737 1.21129 0.96806 0.92168 0.98916 0.94616 0.92191 0.90619 0.88435 0.91566 0.81713 0.83451 0.89933 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.89 71.98 0.71 -2.46 16 2 C -0.07 -1.73 6.05 29.85 0.18 -1.55 16 3 C -0.10 -3.13 5.12 -19.97 -0.10 -3.23 16 4 C -0.09 -2.33 9.68 22.21 0.21 -2.11 16 5 C -0.10 -3.22 10.06 22.54 0.23 -2.99 16 6 C -0.12 -4.99 6.41 22.96 0.15 -4.85 16 7 S 0.05 2.32 23.12 -56.49 -1.31 1.01 16 8 C -0.38 -19.29 6.31 23.61 0.15 -19.14 16 9 C 0.33 17.37 15.19 88.33 1.34 18.72 16 10 N -0.54 -29.09 18.54 19.00 0.35 -28.74 16 11 C 0.13 6.47 5.02 -20.68 -0.10 6.37 16 12 C -0.49 -24.81 8.48 23.15 0.20 -24.62 16 13 H 0.07 3.81 7.93 -2.91 -0.02 3.79 16 14 C 0.02 0.70 3.86 85.41 0.33 1.03 16 15 N -0.76 -35.31 11.64 21.91 0.26 -35.05 16 16 Si 1.11 38.69 30.00 68.60 2.06 40.74 16 17 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 18 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 19 H -0.24 -7.64 7.11 99.48 0.71 -6.93 16 20 C -0.10 -4.50 5.07 -20.22 -0.10 -4.61 16 21 C -0.07 -2.78 8.00 22.70 0.18 -2.60 16 22 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.10 1.67 8.08 -2.39 -0.02 1.65 16 26 H 0.07 1.57 8.08 -2.39 -0.02 1.56 16 27 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 28 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 29 H 0.29 14.39 6.98 -92.71 -0.65 13.75 16 30 H 0.12 4.81 5.99 -2.91 -0.02 4.80 16 Total: -1.00 -58.38 281.39 6.02 -52.36 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 1.29 Total: 11.72 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 3.37 Total: -42.05 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 0.61 Total: -63.79 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.06 Total: 40.74 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.31 Total: 1.01 kcal Total: -58.38 6.02 -52.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211547.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.060 kcal (2) G-P(sol) polarization free energy of solvation -58.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds