Wall clock time and date at job start Mon Mar 30 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47231 * 2 1 4 4 C 1.38122 * 119.42362 * 270.02187 * 3 2 1 5 5 C 1.39708 * 121.51028 * 179.97438 * 4 3 2 6 6 S 1.76060 * 130.37400 * 179.97438 * 5 4 3 7 7 C 1.75497 * 91.63244 * 180.02562 * 6 5 4 8 8 C 1.43198 * 124.81686 * 179.97438 * 7 6 5 9 9 N 8.84819 * 108.71581 * 343.32927 * 2 1 3 10 10 C 1.35576 * 110.36254 * 0.02562 * 7 6 5 11 11 C 1.39267 * 115.35975 * 359.97438 * 10 7 6 12 12 C 1.48079 * 128.97377 * 180.02562 * 11 10 7 13 13 C 1.40390 * 120.40498 * 0.02562 * 12 11 10 14 14 H 1.07995 * 120.00462 * 24.76476 * 13 12 11 15 15 C 1.40168 * 119.99978 * 204.76291 * 13 12 11 16 16 N 1.30736 * 119.99795 * 17.73329 * 15 13 12 17 17 Si 1.86796 * 120.00114 * 197.73546 * 15 13 12 18 18 H 1.48500 * 109.47406 * 94.68869 * 17 15 13 19 19 H 1.48500 * 109.47078 * 214.69288 * 17 15 13 20 20 H 1.48504 * 109.47083 * 334.69403 * 17 15 13 21 21 C 1.37628 * 119.42685 * 90.00442 * 3 2 1 22 22 H 1.09005 * 109.47068 * 300.00013 * 1 2 3 23 23 H 1.08998 * 109.47150 * 59.99535 * 1 2 3 24 24 H 1.09000 * 109.47485 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46468 * 239.99558 * 2 1 3 26 26 H 1.09003 * 109.47041 * 119.99999 * 2 1 3 27 27 H 1.07998 * 119.24487 * 0.02562 * 4 3 2 28 28 H 1.07998 * 122.32007 * 179.97438 * 10 7 6 29 29 H 0.97002 * 119.99645 * 180.02562 * 16 15 13 30 30 H 1.07995 * 119.92275 * 359.71763 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2581 2.0606 -1.2031 5 6 2.7230 3.3771 -1.2539 6 16 3.0866 4.4056 -2.6358 7 6 3.5558 5.7330 -1.5881 8 6 4.0089 7.0130 -2.0432 9 7 4.3692 8.0281 -2.4041 10 6 3.4296 5.3742 -0.2868 11 6 2.9711 4.0776 -0.0673 12 6 2.7250 3.3816 1.2163 13 6 2.9563 4.0373 2.4359 14 1 2.9217 5.1156 2.4844 15 6 3.2323 3.2924 3.5908 16 7 3.6154 2.0466 3.4890 17 14 3.0525 4.0797 5.2751 18 1 1.7057 3.7766 5.8221 19 1 4.0910 3.5381 6.1880 20 1 3.2180 5.5506 5.1542 21 6 2.2578 2.0582 1.1987 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0702 1.5314 -2.1255 28 1 3.6680 6.0473 0.5234 29 1 3.8060 1.5310 4.2883 30 1 2.0700 1.5407 2.1278 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396211623.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:59 Heat of formation + Delta-G solvation = 42.067166 kcal Electronic energy + Delta-G solvation = -15628.332986 eV Core-core repulsion = 13092.763740 eV Total energy + Delta-G solvation = -2535.569247 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.41108 -36.26913 -34.87975 -34.54890 -31.70716 -30.03868 -27.99577 -25.80201 -23.98645 -22.11768 -21.45846 -19.47238 -18.14266 -17.20900 -15.63699 -15.34112 -14.77388 -14.46248 -13.93390 -13.47640 -13.21520 -13.07854 -12.80263 -12.47640 -12.26953 -12.12312 -11.83542 -11.69214 -11.48132 -11.39545 -11.09647 -10.78028 -10.54472 -10.39169 -9.88348 -9.83599 -9.69676 -9.50726 -8.47295 -7.46147 -7.28730 -6.93818 -4.74434 1.25829 2.14597 2.46866 2.76543 2.81313 2.85511 2.91584 3.03414 3.53779 3.62252 3.98001 4.13562 4.74355 5.14865 5.51507 5.58757 5.91531 5.95664 6.16741 6.17383 6.26195 6.33538 6.41157 6.55928 6.64355 6.73159 6.79572 6.94619 7.05382 7.45406 7.51071 7.65443 7.78671 8.09713 8.11582 8.27606 8.45106 9.54295 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.008680 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.067210 B = 3225.049791 C = 4974.825248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.015 4.015 4 C -0.227 4.227 5 C -0.047 4.047 6 S 0.057 5.943 7 C -0.244 4.244 8 C 0.308 3.692 9 N -0.468 5.468 10 C 0.029 3.971 11 C -0.210 4.210 12 C 0.159 3.841 13 C -0.406 4.406 14 H 0.093 0.907 15 C 0.070 3.930 16 N -0.747 5.747 17 Si 0.919 3.081 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.255 1.255 21 C -0.186 4.186 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.293 0.707 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -4.243 0.736 5.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.018 4.018 4 C -0.254 4.254 5 C -0.162 4.162 6 S 0.319 5.681 7 C -0.362 4.362 8 C -0.004 4.004 9 N -0.148 5.148 10 C -0.005 4.005 11 C -0.215 4.215 12 C 0.153 3.847 13 C -0.432 4.432 14 H 0.111 0.889 15 C -0.155 4.155 16 N -0.368 5.368 17 Si 0.741 3.259 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.178 1.178 21 C -0.207 4.207 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.150 0.850 29 H 0.105 0.895 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.803 -2.942 -1.287 4.263 hybrid contribution -0.007 0.016 2.327 2.328 sum -2.810 -2.926 1.040 4.188 Atomic orbital electron populations 1.21706 0.95611 1.00480 1.02113 1.20505 0.95453 0.94239 1.01701 1.19287 0.95503 0.94074 0.92985 1.19388 1.16321 0.93227 0.96500 1.22380 1.01867 0.97680 0.94313 1.83453 1.72060 1.04389 1.08193 1.18863 1.27092 0.93800 0.96409 1.24568 0.91621 0.91408 0.92844 1.81157 1.13583 1.11619 1.08405 1.20109 0.91731 0.94963 0.93689 1.18810 1.14922 0.94424 0.93336 1.18452 0.85861 0.91184 0.89244 1.19875 1.35534 0.95907 0.91907 0.88926 1.26224 0.91963 0.94664 1.02616 1.69779 1.24979 1.08738 1.33281 0.86082 0.79538 0.80981 0.79283 1.18594 1.19585 1.17827 1.20941 1.07354 0.96031 0.96413 0.92627 0.92825 0.93442 0.92131 0.91520 0.88652 0.85016 0.89529 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.16 0.37 -1.64 16 2 C -0.08 -1.32 6.03 -27.89 -0.17 -1.49 16 3 C -0.02 -0.30 5.11 -104.89 -0.54 -0.84 16 4 C -0.23 -4.62 9.64 -39.08 -0.38 -4.99 16 5 C -0.05 -0.99 6.48 -38.37 -0.25 -1.24 16 6 S 0.06 1.08 23.23 -107.50 -2.50 -1.42 16 7 C -0.24 -4.84 6.24 -38.61 -0.24 -5.08 16 8 C 0.31 6.11 15.78 -22.47 -0.35 5.76 16 9 N -0.47 -9.61 18.54 41.84 0.78 -8.84 16 10 C 0.03 0.59 9.68 -40.15 -0.39 0.20 16 11 C -0.21 -4.66 6.01 -104.81 -0.63 -5.29 16 12 C 0.16 3.65 5.76 -104.26 -0.60 3.05 16 13 C -0.41 -8.99 8.81 -38.05 -0.34 -9.33 16 14 H 0.09 1.95 7.49 -52.49 -0.39 1.55 16 15 C 0.07 1.45 5.13 -17.29 -0.09 1.37 16 16 N -0.75 -15.96 10.97 55.56 0.61 -15.35 16 17 Si 0.92 15.55 29.60 -169.99 -5.03 10.52 16 18 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16 19 H -0.27 -4.53 7.11 56.52 0.40 -4.12 16 20 H -0.25 -4.33 7.11 56.52 0.40 -3.93 16 21 C -0.19 -4.10 8.27 -39.01 -0.32 -4.42 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 26 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 27 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.13 2.50 7.69 -52.49 -0.40 2.09 16 29 H 0.29 5.58 8.29 -40.82 -0.34 5.24 16 30 H 0.13 2.78 6.16 -52.49 -0.32 2.46 16 LS Contribution 284.75 15.07 4.29 4.29 Total: -1.00 -23.55 284.75 -8.56 -32.11 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.78 Total: 2.63 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -3.92 Total: -23.94 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 1.38 Total: -24.19 kcal Atomic # 14 Polarization: 15.55 SS G_CDS: -5.03 Total: 10.52 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.50 Total: -1.42 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -23.55 -8.56 -32.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211623.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.178 kcal (2) G-P(sol) polarization free energy of solvation -23.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds