Wall clock time and date at job start Mon Mar 30 2020 06:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47231 * 2 1 4 4 C 1.38122 * 119.42362 * 270.02187 * 3 2 1 5 5 C 1.39708 * 121.51028 * 179.97438 * 4 3 2 6 6 S 1.76060 * 130.37400 * 179.97438 * 5 4 3 7 7 C 1.75497 * 91.63244 * 180.02562 * 6 5 4 8 8 C 1.43198 * 124.81686 * 179.97438 * 7 6 5 9 9 N 8.84819 * 108.71581 * 343.32927 * 2 1 3 10 10 C 1.35576 * 110.36254 * 0.02562 * 7 6 5 11 11 C 1.39267 * 115.35975 * 359.97438 * 10 7 6 12 12 C 1.48079 * 128.97377 * 180.02562 * 11 10 7 13 13 C 1.40390 * 120.40498 * 0.02562 * 12 11 10 14 14 H 1.07995 * 120.00462 * 24.76476 * 13 12 11 15 15 C 1.40168 * 119.99978 * 204.76291 * 13 12 11 16 16 N 1.30736 * 119.99795 * 17.73329 * 15 13 12 17 17 Si 1.86796 * 120.00114 * 197.73546 * 15 13 12 18 18 H 1.48500 * 109.47406 * 94.68869 * 17 15 13 19 19 H 1.48500 * 109.47078 * 214.69288 * 17 15 13 20 20 H 1.48504 * 109.47083 * 334.69403 * 17 15 13 21 21 C 1.37628 * 119.42685 * 90.00442 * 3 2 1 22 22 H 1.09005 * 109.47068 * 300.00013 * 1 2 3 23 23 H 1.08998 * 109.47150 * 59.99535 * 1 2 3 24 24 H 1.09000 * 109.47485 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46468 * 239.99558 * 2 1 3 26 26 H 1.09003 * 109.47041 * 119.99999 * 2 1 3 27 27 H 1.07998 * 119.24487 * 0.02562 * 4 3 2 28 28 H 1.07998 * 122.32007 * 179.97438 * 10 7 6 29 29 H 0.97002 * 119.99645 * 180.02562 * 16 15 13 30 30 H 1.07995 * 119.92275 * 359.71763 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2581 2.0606 -1.2031 5 6 2.7230 3.3771 -1.2539 6 16 3.0866 4.4056 -2.6358 7 6 3.5558 5.7330 -1.5881 8 6 4.0089 7.0130 -2.0432 9 7 4.3692 8.0281 -2.4041 10 6 3.4296 5.3742 -0.2868 11 6 2.9711 4.0776 -0.0673 12 6 2.7250 3.3816 1.2163 13 6 2.9563 4.0373 2.4359 14 1 2.9217 5.1156 2.4844 15 6 3.2323 3.2924 3.5908 16 7 3.6154 2.0466 3.4890 17 14 3.0525 4.0797 5.2751 18 1 1.7057 3.7766 5.8221 19 1 4.0910 3.5381 6.1880 20 1 3.2180 5.5506 5.1542 21 6 2.2578 2.0582 1.1987 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0702 1.5314 -2.1255 28 1 3.6680 6.0473 0.5234 29 1 3.8060 1.5310 4.2883 30 1 2.0700 1.5407 2.1278 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396211623.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:59 Heat of formation + Delta-G solvation = 34.079379 kcal Electronic energy + Delta-G solvation = -15628.679363 eV Core-core repulsion = 13092.763740 eV Total energy + Delta-G solvation = -2535.915623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00362 -37.88361 -36.42004 -36.11295 -33.15444 -31.64406 -29.50727 -27.42493 -25.45683 -23.66782 -22.95231 -21.06093 -19.70952 -18.82091 -17.19817 -16.87279 -16.37019 -15.95725 -15.35255 -15.08598 -14.62894 -14.54697 -14.27014 -14.01377 -13.83184 -13.61705 -13.34677 -13.20354 -13.01059 -12.81228 -12.48121 -12.15571 -12.00296 -11.74938 -11.42727 -11.33963 -11.26332 -11.05948 -10.09407 -9.04501 -8.86765 -8.51869 -6.39828 -0.35719 0.56067 0.90094 1.15901 1.37390 1.40749 1.54159 1.54266 2.00030 2.13153 2.37419 2.55847 3.11613 3.52024 4.17172 4.32571 4.40989 4.53956 4.67593 4.80154 4.88396 4.99524 5.04433 5.06629 5.16975 5.27456 5.33439 5.46123 5.50458 5.81534 5.88902 6.06517 6.16941 6.47966 6.49793 6.64352 6.82235 8.02740 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.014504 B = 0.008680 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.067210 B = 3225.049791 C = 4974.825248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C -0.014 4.014 4 C -0.235 4.235 5 C -0.067 4.067 6 S 0.102 5.898 7 C -0.244 4.244 8 C 0.318 3.682 9 N -0.476 5.476 10 C 0.022 3.978 11 C -0.232 4.232 12 C 0.133 3.867 13 C -0.433 4.433 14 H 0.094 0.906 15 C 0.039 3.961 16 N -0.774 5.774 17 Si 0.984 3.016 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.256 1.256 21 C -0.210 4.210 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.302 0.698 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -4.599 0.499 5.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 C -0.017 4.017 4 C -0.262 4.262 5 C -0.183 4.183 6 S 0.365 5.635 7 C -0.362 4.362 8 C 0.005 3.995 9 N -0.156 5.156 10 C -0.012 4.012 11 C -0.237 4.237 12 C 0.127 3.873 13 C -0.459 4.459 14 H 0.112 0.888 15 C -0.183 4.183 16 N -0.396 5.396 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.189 1.189 20 H -0.179 1.179 21 C -0.232 4.232 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.158 0.842 29 H 0.114 0.886 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.166 -3.305 -1.548 4.831 hybrid contribution 0.123 0.117 2.293 2.300 sum -3.043 -3.187 0.746 4.469 Atomic orbital electron populations 1.21657 0.93902 1.02190 1.01572 1.20561 0.96846 0.91851 1.02496 1.19696 0.94024 0.95770 0.92247 1.19694 1.15999 0.93161 0.97388 1.22732 1.01952 0.98458 0.95182 1.83221 1.71199 1.02816 1.06300 1.18979 1.26514 0.94119 0.96616 1.24458 0.91328 0.91188 0.92497 1.81169 1.13784 1.11793 1.08843 1.20182 0.91926 0.94756 0.94318 1.19038 1.15737 0.95263 0.93664 1.18804 0.86441 0.91987 0.90035 1.20104 1.36842 0.96218 0.92721 0.88826 1.26940 0.91075 0.94942 1.05350 1.69796 1.25297 1.09795 1.34670 0.85119 0.79607 0.79831 0.75064 1.18167 1.18858 1.17942 1.20954 1.09051 0.96262 0.96891 0.93780 0.92753 0.90604 0.90380 0.91627 0.86652 0.84203 0.88618 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.89 71.98 0.71 -2.90 16 2 C -0.08 -2.48 6.03 29.85 0.18 -2.30 16 3 C -0.01 -0.55 5.11 -20.04 -0.10 -0.65 16 4 C -0.24 -9.35 9.64 22.60 0.22 -9.13 16 5 C -0.07 -2.82 6.48 23.06 0.15 -2.67 16 6 S 0.10 3.71 23.23 -56.49 -1.31 2.40 16 7 C -0.24 -9.46 6.24 22.90 0.14 -9.32 16 8 C 0.32 12.18 15.78 88.33 1.39 13.58 16 9 N -0.48 -18.89 18.54 19.00 0.35 -18.54 16 10 C 0.02 0.91 9.68 21.90 0.21 1.12 16 11 C -0.23 -10.39 6.01 -19.99 -0.12 -10.51 16 12 C 0.13 6.27 5.76 -19.63 -0.11 6.16 16 13 C -0.43 -19.63 8.81 23.26 0.21 -19.42 16 14 H 0.09 4.04 7.49 -2.91 -0.02 4.02 16 15 C 0.04 1.64 5.13 85.32 0.44 2.08 16 16 N -0.77 -33.56 10.97 21.87 0.24 -33.32 16 17 Si 0.98 31.64 29.60 68.60 2.03 33.67 16 18 H -0.26 -8.05 7.11 99.48 0.71 -7.34 16 19 H -0.26 -8.13 7.11 99.48 0.71 -7.42 16 20 H -0.26 -8.18 7.11 99.48 0.71 -7.48 16 21 C -0.21 -9.45 8.27 22.64 0.19 -9.27 16 22 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 26 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 27 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.14 5.34 7.69 -2.91 -0.02 5.32 16 29 H 0.30 11.56 8.29 -92.71 -0.77 10.79 16 30 H 0.12 5.30 6.16 -2.91 -0.02 5.28 16 Total: -1.00 -49.48 284.75 5.98 -43.50 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.17 Total: 15.51 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 3.50 Total: -43.22 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: 0.59 Total: -51.86 kcal Atomic # 14 Polarization: 31.64 SS G_CDS: 2.03 Total: 33.67 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -1.31 Total: 2.40 kcal Total: -49.48 5.98 -43.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211623.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.577 kcal (2) G-P(sol) polarization free energy of solvation -49.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds