Wall clock time and date at job start Mon Mar 30 2020 06:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46919 * 2 1 4 4 C 1.40816 * 120.01442 * 90.00007 * 3 2 1 5 5 C 1.45042 * 129.03072 * 0.02562 * 4 3 2 6 6 C 1.33581 * 114.62496 * 179.97438 * 5 4 3 7 7 C 1.43203 * 124.34873 * 179.97438 * 6 5 4 8 8 N 6.41011 * 96.34926 * 71.64790 * 2 1 3 9 9 S 1.75251 * 111.29834 * 0.02562 * 6 5 4 10 10 C 1.40352 * 119.00052 * 180.02562 * 4 3 2 11 11 C 1.40560 * 120.09157 * 0.02562 * 10 4 3 12 12 C 1.35622 * 120.87034 * 359.97438 * 11 10 4 13 13 C 1.39815 * 120.01367 * 270.02306 * 3 2 1 14 14 C 1.41267 * 120.04975 * 359.95661 * 13 3 2 15 15 H 1.07998 * 120.00310 * 25.72030 * 14 13 3 16 16 C 1.39865 * 119.99921 * 205.71513 * 14 13 3 17 17 N 1.30892 * 119.99961 * 15.50358 * 16 14 13 18 18 Si 1.86802 * 120.00074 * 195.50421 * 16 14 13 19 19 H 1.48497 * 109.47007 * 89.99968 * 18 16 14 20 20 H 1.48502 * 109.46855 * 210.00361 * 18 16 14 21 21 H 1.48504 * 109.46911 * 329.99874 * 18 16 14 22 22 H 1.09004 * 109.47169 * 299.99551 * 1 2 3 23 23 H 1.08998 * 109.47458 * 59.99685 * 1 2 3 24 24 H 1.08998 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47207 * 240.00008 * 2 1 3 26 26 H 1.08994 * 109.47300 * 119.99568 * 2 1 3 27 27 H 1.07999 * 122.68968 * 359.72379 * 5 4 3 28 28 H 1.07998 * 119.56501 * 179.97438 * 11 10 4 29 29 H 1.07997 * 119.91486 * 179.97438 * 12 11 10 30 30 H 0.97005 * 120.00375 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2671 2.0850 1.2193 5 6 2.0947 1.5957 2.5738 6 6 2.4067 2.4771 3.5279 7 6 2.3137 2.2141 4.9325 8 7 2.2389 2.0059 6.0468 9 16 2.9430 3.9970 2.8397 10 6 2.7343 3.4082 1.1945 11 6 2.9609 4.0526 -0.0339 12 6 2.7346 3.4123 -1.2078 13 6 2.2649 2.0804 -1.2107 14 6 2.0304 1.4156 -2.4349 15 1 1.3150 0.6079 -2.4823 16 6 2.7245 1.8035 -3.5855 17 7 3.7912 2.5552 -3.4841 18 14 2.1292 1.2488 -5.2670 19 1 1.1729 2.2478 -5.8079 20 1 3.2887 1.1249 -6.1865 21 1 1.4528 -0.0675 -5.1432 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.7385 0.6001 2.7935 28 1 3.3201 5.0711 -0.0431 29 1 2.9135 3.9223 -2.1428 30 1 4.2729 2.8239 -4.2820 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396211653.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:36 Heat of formation + Delta-G solvation = 46.558347 kcal Electronic energy + Delta-G solvation = -15772.665079 eV Core-core repulsion = 13237.290584 eV Total energy + Delta-G solvation = -2535.374495 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.64240 -36.66967 -34.95946 -33.20535 -33.07296 -29.34731 -28.28274 -25.71680 -23.70536 -22.72030 -20.87835 -19.88949 -17.84062 -17.31895 -15.99827 -15.19715 -14.67359 -14.50744 -13.85909 -13.75578 -13.24839 -13.14076 -12.61825 -12.58812 -12.54290 -12.27974 -11.64426 -11.57671 -11.31093 -11.23354 -10.96257 -10.88675 -10.49090 -10.35167 -10.01945 -9.79236 -9.41295 -9.33669 -8.44822 -7.55828 -7.09103 -6.82949 -4.56974 1.07665 1.80098 2.43771 2.71540 2.90244 2.96580 2.99253 3.00143 3.19910 3.64017 3.76607 4.20332 4.32613 5.30575 5.60419 5.74513 5.86251 5.98670 6.11788 6.20419 6.22633 6.48991 6.53577 6.62661 6.75067 6.82707 6.96676 7.01163 7.32284 7.37366 7.48094 7.63506 7.73215 7.95106 8.29544 8.60899 8.64782 9.94600 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.006112 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.947015 B = 4580.066589 C = 5292.041062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.165 4.165 4 C -0.049 4.049 5 C -0.029 4.029 6 C -0.149 4.149 7 C 0.294 3.706 8 N -0.434 5.434 9 S 0.073 5.927 10 C -0.205 4.205 11 C -0.090 4.090 12 C -0.100 4.100 13 C 0.114 3.886 14 C -0.447 4.447 15 H 0.087 0.913 16 C 0.074 3.926 17 N -0.791 5.791 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.260 1.260 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 -0.303 0.885 2.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.170 4.170 4 C -0.055 4.055 5 C -0.068 4.068 6 C -0.267 4.267 7 C -0.021 4.021 8 N -0.112 5.112 9 S 0.336 5.664 10 C -0.321 4.321 11 C -0.112 4.112 12 C -0.122 4.122 13 C 0.110 3.890 14 C -0.476 4.476 15 H 0.105 0.895 16 C -0.144 4.144 17 N -0.416 5.416 18 Si 0.735 3.265 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.157 0.843 28 H 0.117 0.883 29 H 0.149 0.851 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.662 0.865 3.144 3.659 hybrid contribution -0.483 -1.326 -1.801 2.288 sum -2.144 -0.462 1.342 2.572 Atomic orbital electron populations 1.21741 0.96731 0.99814 1.01699 1.20117 0.94455 0.94085 1.01055 1.19491 1.11983 0.95395 0.90153 1.18527 1.02604 0.92825 0.91503 1.21317 0.95861 0.98613 0.90969 1.19057 1.17733 1.01895 0.87981 1.24656 0.92751 0.93258 0.91423 1.81204 1.10550 1.08258 1.11191 1.83482 1.72853 1.11557 0.98524 1.22123 1.16480 0.98559 0.94930 1.19825 1.02757 0.98377 0.90266 1.21242 0.99647 0.94764 0.96506 1.17304 0.88981 0.90928 0.91765 1.19628 1.20228 1.15781 0.91962 0.89484 1.25975 0.93303 0.93433 1.01718 1.69792 1.12263 1.27412 1.32105 0.86242 0.79332 0.80345 0.80549 1.19127 1.20198 1.18393 0.93629 0.92442 0.94092 0.91054 0.93555 0.84329 0.88337 0.85089 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.85 37.16 0.37 -1.94 16 2 C -0.06 -1.08 5.27 -27.88 -0.15 -1.23 16 3 C -0.17 -3.47 5.26 -103.06 -0.54 -4.02 16 4 C -0.05 -0.99 5.96 -105.43 -0.63 -1.62 16 5 C -0.03 -0.51 9.65 -38.52 -0.37 -0.88 16 6 C -0.15 -2.54 6.15 -39.29 -0.24 -2.78 16 7 C 0.29 4.96 15.73 -22.47 -0.35 4.60 16 8 N -0.43 -7.68 18.54 41.84 0.78 -6.91 16 9 S 0.07 1.26 23.16 -107.50 -2.49 -1.22 16 10 C -0.21 -4.15 6.51 -37.91 -0.25 -4.40 16 11 C -0.09 -1.86 9.98 -39.64 -0.40 -2.26 16 12 C -0.10 -2.26 8.59 -39.38 -0.34 -2.60 16 13 C 0.11 2.61 5.55 -107.02 -0.59 2.02 16 14 C -0.45 -10.18 8.09 -37.82 -0.31 -10.48 16 15 H 0.09 1.90 6.46 -52.49 -0.34 1.56 16 16 C 0.07 1.64 5.17 -17.34 -0.09 1.55 16 17 N -0.79 -18.07 10.88 55.54 0.60 -17.47 16 18 Si 0.91 16.68 29.59 -169.99 -5.03 11.65 16 19 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 0.98 7.83 -51.93 -0.41 0.57 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.35 6.73 -51.93 -0.35 1.00 16 26 H 0.05 0.76 7.25 -51.93 -0.38 0.39 16 27 H 0.14 2.09 7.53 -52.49 -0.40 1.70 16 28 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.13 3.02 6.14 -52.49 -0.32 2.70 16 30 H 0.28 5.94 8.30 -40.82 -0.34 5.61 16 LS Contribution 279.85 15.07 4.22 4.22 Total: -1.00 -23.43 279.85 -8.40 -31.83 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -2.59 Total: 1.94 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.89 Total: -24.04 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 1.38 Total: -24.38 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -5.03 Total: 11.65 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -23.43 -8.40 -31.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396211653.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.390 kcal (2) G-P(sol) polarization free energy of solvation -23.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds