Wall clock time and date at job start Mon Mar 30 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.41070 * 119.82214 * 66.92526 * 3 2 1 5 5 S 1.76134 * 129.66791 * 359.97438 * 4 3 2 6 6 C 1.75217 * 92.25690 * 180.28429 * 5 4 3 7 7 C 1.31853 * 111.51904 * 0.02562 * 6 5 4 8 8 C 1.40388 * 120.74086 * 180.30773 * 4 3 2 9 9 C 1.40526 * 120.02365 * 359.75983 * 8 4 3 10 10 C 1.39975 * 120.82279 * 0.02791 * 9 8 4 11 11 C 1.40583 * 120.38313 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00450 * 143.75491 * 11 10 9 13 13 C 1.40294 * 119.99297 * 323.75627 * 11 10 9 14 14 N 1.30632 * 120.00352 * 349.48088 * 13 11 10 15 15 Si 1.86807 * 119.99504 * 169.48389 * 13 11 10 16 16 H 1.48498 * 109.46923 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47119 * 120.00076 * 15 13 11 18 18 H 1.48496 * 109.46754 * 239.99799 * 15 13 11 19 19 C 1.40377 * 119.82282 * 246.78285 * 3 2 1 20 20 C 1.41779 * 120.59078 * 359.93577 * 19 3 2 21 21 O 1.21413 * 119.99906 * 174.23421 * 20 19 3 22 22 H 1.07995 * 124.24229 * 179.97438 * 6 5 4 23 23 H 1.08001 * 122.51801 * 180.02562 * 7 6 5 24 24 H 1.08000 * 119.58201 * 180.02562 * 9 8 4 25 25 H 0.97006 * 119.99831 * 180.02562 * 14 13 11 26 26 H 1.08001 * 120.00040 * 354.23283 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.4787 -1.1260 5 16 2.6529 -1.1261 -2.6434 6 6 4.2687 -1.3987 -3.2640 7 6 5.1892 -1.0308 -2.3946 8 6 4.6735 -0.4929 -1.1441 9 6 5.3958 -0.0215 -0.0347 10 6 4.7334 0.4655 1.0981 11 6 5.4653 0.9343 2.2031 12 1 5.1048 1.7796 2.7703 13 6 6.6641 0.3039 2.5688 14 7 6.9973 -0.8341 2.0207 15 14 7.7838 1.0920 3.8396 16 1 7.1837 2.3684 4.3042 17 1 7.9471 0.1721 4.9938 18 1 9.1108 1.3622 3.2303 19 6 3.2659 0.4811 1.1192 20 6 2.5657 0.9680 2.2518 21 8 3.1755 1.2830 3.2533 22 1 4.4837 -1.8165 -4.2364 23 1 6.2465 -1.1209 -2.5954 24 1 6.4755 -0.0353 -0.0565 25 1 7.8261 -1.2701 2.2739 26 1 1.4899 1.0589 2.2236 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212006.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:28 Heat of formation + Delta-G solvation = 32.054635 kcal Electronic energy + Delta-G solvation = -15619.590311 eV Core-core repulsion = 12947.753793 eV Total energy + Delta-G solvation = -2671.836517 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.96756 -37.31148 -36.17787 -34.83549 -33.38288 -30.46781 -29.19642 -26.37764 -23.82522 -23.03145 -21.03579 -19.86426 -18.26548 -17.00728 -16.26133 -15.97017 -15.32305 -14.58588 -14.10288 -13.80971 -13.60491 -13.08838 -12.83338 -12.66395 -12.40485 -12.33541 -12.18197 -12.02508 -11.54006 -11.36720 -11.01529 -10.69395 -10.39001 -10.10411 -9.95425 -9.56290 -8.76650 -8.47506 -7.68714 -7.24058 -7.09466 -4.75788 0.98132 1.81282 2.23889 2.51456 2.66203 2.91592 2.94934 3.00012 3.12276 3.49166 3.68788 3.78322 4.29650 4.47957 5.08209 5.22870 5.35634 5.80176 5.89065 6.15381 6.39274 6.52904 6.58988 6.69466 6.73161 6.89256 7.14321 7.44909 7.47829 7.92598 8.12899 8.27352 8.35402 8.62137 9.69990 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.008344 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.640607 B = 3354.730420 C = 4529.578345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.264 3.736 3 C 0.073 3.927 4 C -0.190 4.190 5 S 0.008 5.992 6 C -0.194 4.194 7 C -0.107 4.107 8 C -0.050 4.050 9 C -0.084 4.084 10 C 0.134 3.866 11 C -0.386 4.386 12 H 0.111 0.889 13 C 0.066 3.934 14 N -0.769 5.769 15 Si 0.924 3.076 16 H -0.253 1.253 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.241 4.241 20 C 0.367 3.633 21 O -0.469 6.469 22 H 0.156 0.844 23 H 0.137 0.863 24 H 0.128 0.872 25 H 0.292 0.708 26 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -0.241 -5.148 5.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.050 4.050 3 C 0.064 3.936 4 C -0.307 4.307 5 S 0.266 5.734 6 C -0.327 4.327 7 C -0.138 4.138 8 C -0.055 4.055 9 C -0.106 4.106 10 C 0.128 3.872 11 C -0.413 4.413 12 H 0.129 0.871 13 C -0.156 4.156 14 N -0.392 5.392 15 Si 0.747 3.253 16 H -0.176 1.176 17 H -0.194 1.194 18 H -0.194 1.194 19 C -0.248 4.248 20 C 0.232 3.768 21 O -0.347 6.347 22 H 0.173 0.827 23 H 0.155 0.845 24 H 0.145 0.855 25 H 0.103 0.897 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.497 -0.534 -5.257 5.307 hybrid contribution 2.266 0.145 0.751 2.392 sum 1.770 -0.389 -4.507 4.857 Atomic orbital electron populations 1.81116 1.12067 1.09653 1.08743 1.26084 0.93074 0.93104 0.92764 1.15237 0.82283 1.02093 0.94009 1.21680 0.95817 1.15372 0.97787 1.83811 1.07769 1.70544 1.11265 1.24759 0.95892 1.08486 1.03537 1.21076 0.99891 1.00187 0.92675 1.19104 0.90830 1.00779 0.94819 1.21439 0.99387 0.99766 0.90033 1.18231 0.88302 0.88338 0.92282 1.20191 1.01116 1.11361 1.08608 0.87081 1.26261 0.97512 0.94198 0.97621 1.69672 1.22008 1.12088 1.35480 0.85957 0.78876 0.80816 0.79641 1.17608 1.19403 1.19370 1.20437 0.94735 1.13983 0.95601 1.21858 0.92861 0.75870 0.86169 1.90482 1.71993 1.38870 1.33369 0.82683 0.84520 0.85454 0.89710 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.84 18.54 41.84 0.78 -8.06 15 2 C 0.26 5.26 13.52 -22.47 -0.30 4.96 15 3 C 0.07 1.52 5.80 -106.09 -0.62 0.90 15 4 C -0.19 -3.85 6.34 -37.70 -0.24 -4.09 15 5 S 0.01 0.14 22.86 -107.50 -2.46 -2.32 15 6 C -0.19 -2.97 11.01 28.83 0.32 -2.66 15 7 C -0.11 -1.80 10.37 -38.56 -0.40 -2.20 15 8 C -0.05 -1.00 6.01 -105.31 -0.63 -1.63 15 9 C -0.08 -1.83 8.65 -38.07 -0.33 -2.16 15 10 C 0.13 3.11 5.59 -104.91 -0.59 2.53 15 11 C -0.39 -9.10 7.62 -37.93 -0.29 -9.39 15 12 H 0.11 2.69 6.14 -52.49 -0.32 2.37 15 13 C 0.07 1.45 5.21 -17.29 -0.09 1.36 15 14 N -0.77 -17.11 11.36 55.57 0.63 -16.48 15 15 Si 0.92 16.87 29.58 -169.99 -5.03 11.84 15 16 H -0.25 -4.71 7.11 56.52 0.40 -4.31 15 17 H -0.27 -4.93 7.11 56.52 0.40 -4.52 15 18 H -0.27 -4.70 7.11 56.52 0.40 -4.29 15 19 C -0.24 -5.33 5.93 -104.29 -0.62 -5.95 15 20 C 0.37 7.87 10.75 32.08 0.35 8.21 15 21 O -0.47 -11.16 14.49 5.44 0.08 -11.08 15 22 H 0.16 1.84 8.06 -52.49 -0.42 1.42 15 23 H 0.14 1.95 8.06 -52.49 -0.42 1.52 15 24 H 0.13 2.75 6.76 -52.49 -0.35 2.40 15 25 H 0.29 5.81 8.29 -40.82 -0.34 5.48 15 26 H 0.06 1.12 7.11 -52.49 -0.37 0.74 15 LS Contribution 259.35 15.07 3.91 3.91 Total: -1.00 -24.94 259.35 -6.56 -31.50 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -1.03 Total: 0.81 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.44 Total: -10.11 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 1.41 Total: -24.54 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.46 Total: -2.32 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -24.94 -6.56 -31.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212006.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.554 kcal (2) G-P(sol) polarization free energy of solvation -24.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds