Wall clock time and date at job start Mon Mar 30 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.41070 * 119.82214 * 66.92526 * 3 2 1 5 5 S 1.76134 * 129.66791 * 359.97438 * 4 3 2 6 6 C 1.75217 * 92.25690 * 180.28429 * 5 4 3 7 7 C 1.31853 * 111.51904 * 0.02562 * 6 5 4 8 8 C 1.40388 * 120.74086 * 180.30773 * 4 3 2 9 9 C 1.40526 * 120.02365 * 359.75983 * 8 4 3 10 10 C 1.39975 * 120.82279 * 0.02791 * 9 8 4 11 11 C 1.40583 * 120.38313 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00450 * 143.75491 * 11 10 9 13 13 C 1.40294 * 119.99297 * 323.75627 * 11 10 9 14 14 N 1.30632 * 120.00352 * 349.48088 * 13 11 10 15 15 Si 1.86807 * 119.99504 * 169.48389 * 13 11 10 16 16 H 1.48498 * 109.46923 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47119 * 120.00076 * 15 13 11 18 18 H 1.48496 * 109.46754 * 239.99799 * 15 13 11 19 19 C 1.40377 * 119.82282 * 246.78285 * 3 2 1 20 20 C 1.41779 * 120.59078 * 359.93577 * 19 3 2 21 21 O 1.21413 * 119.99906 * 174.23421 * 20 19 3 22 22 H 1.07995 * 124.24229 * 179.97438 * 6 5 4 23 23 H 1.08001 * 122.51801 * 180.02562 * 7 6 5 24 24 H 1.08000 * 119.58201 * 180.02562 * 9 8 4 25 25 H 0.97006 * 119.99831 * 180.02562 * 14 13 11 26 26 H 1.08001 * 120.00040 * 354.23283 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.4787 -1.1260 5 16 2.6529 -1.1261 -2.6434 6 6 4.2687 -1.3987 -3.2640 7 6 5.1892 -1.0308 -2.3946 8 6 4.6735 -0.4929 -1.1441 9 6 5.3958 -0.0215 -0.0347 10 6 4.7334 0.4655 1.0981 11 6 5.4653 0.9343 2.2031 12 1 5.1048 1.7796 2.7703 13 6 6.6641 0.3039 2.5688 14 7 6.9973 -0.8341 2.0207 15 14 7.7838 1.0920 3.8396 16 1 7.1837 2.3684 4.3042 17 1 7.9471 0.1721 4.9938 18 1 9.1108 1.3622 3.2303 19 6 3.2659 0.4811 1.1192 20 6 2.5657 0.9680 2.2518 21 8 3.1755 1.2830 3.2533 22 1 4.4837 -1.8165 -4.2364 23 1 6.2465 -1.1209 -2.5954 24 1 6.4755 -0.0353 -0.0565 25 1 7.8261 -1.2701 2.2739 26 1 1.4899 1.0589 2.2236 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212006.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:28 Heat of formation + Delta-G solvation = 20.399934 kcal Electronic energy + Delta-G solvation = -15620.095697 eV Core-core repulsion = 12947.753793 eV Total energy + Delta-G solvation = -2672.341903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62795 -38.97531 -37.78502 -36.42569 -34.96065 -32.12539 -30.74834 -28.05452 -25.43430 -24.60929 -22.55648 -21.47197 -19.81613 -18.59432 -17.89772 -17.59055 -16.90584 -16.14260 -15.60871 -15.45946 -15.15001 -14.65329 -14.53714 -14.27712 -13.94233 -13.89539 -13.71140 -13.56524 -13.10654 -12.88866 -12.60820 -12.18966 -11.89847 -11.65566 -11.46096 -11.13566 -10.40243 -10.13289 -9.28073 -8.86235 -8.60514 -6.46976 -0.64242 0.24127 0.80207 1.04111 1.22778 1.41431 1.47968 1.50517 1.56167 1.83954 2.18455 2.20122 2.64079 2.83680 3.39883 3.67412 3.96052 4.29167 4.45027 4.76601 4.86572 4.96682 5.03561 5.09950 5.17546 5.27418 5.61902 5.79098 5.83606 6.29778 6.41893 6.56313 6.66344 6.92044 8.10569 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.008344 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.640607 B = 3354.730420 C = 4529.578345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.271 3.729 3 C 0.072 3.928 4 C -0.206 4.206 5 S 0.023 5.977 6 C -0.166 4.166 7 C -0.127 4.127 8 C -0.050 4.050 9 C -0.101 4.101 10 C 0.114 3.886 11 C -0.419 4.419 12 H 0.094 0.906 13 C 0.037 3.963 14 N -0.793 5.793 15 Si 0.984 3.016 16 H -0.264 1.264 17 H -0.267 1.267 18 H -0.251 1.251 19 C -0.261 4.261 20 C 0.370 3.630 21 O -0.498 6.498 22 H 0.201 0.799 23 H 0.164 0.836 24 H 0.123 0.877 25 H 0.301 0.699 26 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 -1.037 -6.959 7.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.043 4.043 3 C 0.063 3.937 4 C -0.322 4.322 5 S 0.282 5.718 6 C -0.298 4.298 7 C -0.157 4.157 8 C -0.056 4.056 9 C -0.123 4.123 10 C 0.109 3.891 11 C -0.446 4.446 12 H 0.112 0.888 13 C -0.183 4.183 14 N -0.418 5.418 15 Si 0.804 3.196 16 H -0.188 1.188 17 H -0.192 1.192 18 H -0.175 1.175 19 C -0.268 4.268 20 C 0.237 3.763 21 O -0.379 6.379 22 H 0.218 0.782 23 H 0.181 0.819 24 H 0.141 0.859 25 H 0.113 0.887 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.218 -1.340 -7.094 7.223 hybrid contribution 2.042 0.313 1.110 2.346 sum 1.824 -1.027 -5.984 6.339 Atomic orbital electron populations 1.81124 1.11908 1.09684 1.08813 1.25874 0.92731 0.93019 0.92675 1.15240 0.82612 1.01864 0.93990 1.22092 0.96386 1.14752 0.99013 1.83824 1.09193 1.69737 1.09091 1.25264 0.93934 1.05987 1.04619 1.21239 1.01725 1.01273 0.91465 1.19517 0.90955 0.99488 0.95634 1.21375 0.99249 1.01210 0.90487 1.18533 0.89048 0.88695 0.92806 1.20186 1.02807 1.12077 1.09504 0.88834 1.26877 0.98017 0.94346 0.99026 1.69670 1.22819 1.12681 1.36591 0.85097 0.77694 0.79283 0.77486 1.18780 1.19179 1.17516 1.20589 0.94747 1.14917 0.96506 1.22179 0.93820 0.74791 0.85494 1.90469 1.72767 1.40308 1.34310 0.78200 0.81864 0.85939 0.88745 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -17.04 18.54 19.00 0.35 -16.69 15 2 C 0.27 10.55 13.52 88.33 1.19 11.74 15 3 C 0.07 2.98 5.80 -20.82 -0.12 2.86 15 4 C -0.21 -8.10 6.34 23.49 0.15 -7.95 15 5 S 0.02 0.75 22.86 -56.49 -1.29 -0.54 15 6 C -0.17 -4.35 11.01 67.01 0.74 -3.61 15 7 C -0.13 -3.87 10.37 23.35 0.24 -3.63 15 8 C -0.05 -1.96 6.01 -20.31 -0.12 -2.08 15 9 C -0.10 -4.48 8.65 23.25 0.20 -4.28 15 10 C 0.11 5.50 5.59 -20.05 -0.11 5.39 15 11 C -0.42 -20.59 7.62 23.34 0.18 -20.41 15 12 H 0.09 4.81 6.14 -2.91 -0.02 4.79 15 13 C 0.04 1.65 5.21 85.37 0.44 2.10 15 14 N -0.79 -35.81 11.36 21.89 0.25 -35.57 15 15 Si 0.98 35.04 29.58 68.60 2.03 37.07 15 16 H -0.26 -9.75 7.11 99.48 0.71 -9.04 15 17 H -0.27 -9.33 7.11 99.48 0.71 -8.62 15 18 H -0.25 -8.16 7.11 99.48 0.71 -7.45 15 19 C -0.26 -11.80 5.93 -19.65 -0.12 -11.92 15 20 C 0.37 16.21 10.75 68.70 0.74 16.95 15 21 O -0.50 -24.58 14.49 -3.44 -0.05 -24.63 15 22 H 0.20 3.49 8.06 -2.91 -0.02 3.47 15 23 H 0.16 4.09 8.06 -2.91 -0.02 4.06 15 24 H 0.12 5.42 6.76 -2.91 -0.02 5.40 15 25 H 0.30 12.03 8.29 -92.70 -0.77 11.26 15 26 H 0.09 3.23 7.11 -2.91 -0.02 3.21 15 Total: -1.00 -54.06 259.35 5.95 -48.11 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.25 Total: 7.08 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 3.41 Total: -14.83 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.60 Total: -52.26 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -1.29 Total: -0.54 kcal Total: -54.06 5.95 -48.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212006.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.508 kcal (2) G-P(sol) polarization free energy of solvation -54.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds