Wall clock time and date at job start Mon Mar 30 2020 06:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50691 * 109.47183 * 2 1 4 4 C 1.35579 * 122.32184 * 267.35794 * 3 2 1 5 5 C 1.43203 * 124.81666 * 0.02562 * 4 3 2 6 6 N 3.72267 * 98.70439 * 287.55461 * 2 1 3 7 7 S 1.75495 * 110.35991 * 179.97438 * 4 3 2 8 8 C 1.76056 * 91.62810 * 0.02562 * 7 4 3 9 9 C 1.39751 * 130.36335 * 179.97438 * 8 7 4 10 10 C 1.38077 * 121.50492 * 180.02562 * 9 8 7 11 11 C 1.37669 * 121.14962 * 359.97438 * 10 9 8 12 12 C 1.40321 * 120.14456 * 0.26173 * 11 10 9 13 13 C 1.40400 * 120.40462 * 179.72387 * 12 11 10 14 14 H 1.07996 * 120.00091 * 145.76783 * 13 12 11 15 15 C 1.40151 * 119.99910 * 325.76352 * 13 12 11 16 16 N 1.30741 * 120.00471 * 350.71601 * 15 13 12 17 17 Si 1.86801 * 120.00067 * 170.71301 * 15 13 12 18 18 H 1.48501 * 109.46767 * 59.99909 * 17 15 13 19 19 H 1.48493 * 109.47290 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47171 * 300.00509 * 17 15 13 21 21 C 1.39267 * 122.32592 * 87.34359 * 3 2 1 22 22 H 1.08999 * 109.46896 * 300.00435 * 1 2 3 23 23 H 1.08996 * 109.47176 * 59.99923 * 1 2 3 24 24 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46896 * 239.99565 * 2 1 3 26 26 H 1.09005 * 109.47033 * 119.99885 * 2 1 3 27 27 H 1.07997 * 119.24813 * 359.97438 * 9 8 7 28 28 H 1.08005 * 119.42951 * 180.02562 * 10 9 8 29 29 H 1.08009 * 119.92690 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00235 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3237 2.0866 -1.1445 5 6 2.1951 1.5419 -2.4627 6 7 2.0934 1.1099 -3.5084 7 16 2.8795 3.7110 -0.7812 8 6 2.6995 3.4397 0.9490 9 6 2.9478 4.2908 2.0293 10 6 2.7407 3.8826 3.3320 11 6 2.2795 2.6172 3.6169 12 6 2.0156 1.7126 2.5771 13 6 1.5506 0.4188 2.8617 14 1 0.8571 -0.0657 2.1903 15 6 1.9864 -0.2441 4.0171 16 7 2.9576 0.2597 4.7329 17 14 1.1795 -1.8474 4.5346 18 1 1.3470 -2.8559 3.4575 19 1 1.8180 -2.3434 5.7802 20 1 -0.2675 -1.6177 4.7769 21 6 2.2291 2.1410 1.1756 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.3108 5.2904 1.8409 28 1 2.9432 4.5683 4.1415 29 1 2.1248 2.3184 4.6432 30 1 3.2589 -0.1989 5.5327 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:55 Heat of formation + Delta-G solvation = 50.389035 kcal Electronic energy + Delta-G solvation = -16134.037802 eV Core-core repulsion = 13598.829419 eV Total energy + Delta-G solvation = -2535.208384 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.67273 -36.30325 -34.85077 -34.25486 -31.39991 -29.88351 -28.59471 -25.73060 -24.14966 -22.14473 -21.35243 -19.23844 -18.34585 -16.80530 -15.78675 -15.56953 -14.92483 -14.35614 -13.73840 -13.47173 -13.25438 -13.13260 -12.79654 -12.39026 -12.24055 -11.96605 -11.82201 -11.59538 -11.55920 -11.32727 -10.92388 -10.81779 -10.47126 -10.16451 -10.02553 -9.79352 -9.66718 -9.53365 -8.28495 -7.50561 -7.23658 -6.87024 -4.73980 1.24541 2.14561 2.48628 2.75450 2.83501 2.85426 2.91178 3.02863 3.57863 3.62520 3.97821 4.21978 4.74911 5.15560 5.53955 5.66897 5.90034 5.96827 6.08764 6.15535 6.34718 6.38607 6.48086 6.60369 6.68877 6.75082 6.88668 7.00208 7.08661 7.43554 7.54645 7.64226 7.75436 8.11361 8.15352 8.30076 8.44931 9.66630 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.008996 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.650302 B = 3111.708719 C = 4294.207412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C 0.066 3.934 4 C -0.244 4.244 5 C 0.310 3.690 6 N -0.468 5.468 7 S 0.056 5.944 8 C -0.054 4.054 9 C -0.224 4.224 10 C -0.052 4.052 11 C -0.181 4.181 12 C 0.164 3.836 13 C -0.427 4.427 14 H 0.106 0.894 15 C 0.070 3.930 16 N -0.762 5.762 17 Si 0.915 3.085 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.257 1.257 21 C -0.194 4.194 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 0.212 1.517 2.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C 0.050 3.950 4 C -0.361 4.361 5 C -0.002 4.002 6 N -0.147 5.147 7 S 0.320 5.680 8 C -0.170 4.170 9 C -0.251 4.251 10 C -0.074 4.074 11 C -0.203 4.203 12 C 0.159 3.841 13 C -0.454 4.454 14 H 0.124 0.876 15 C -0.153 4.153 16 N -0.384 5.384 17 Si 0.737 3.263 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.181 1.181 21 C -0.199 4.199 22 H 0.087 0.913 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.139 0.861 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.526 0.690 -0.897 1.900 hybrid contribution -0.449 -1.502 1.535 2.194 sum -1.975 -0.812 0.638 2.229 Atomic orbital electron populations 1.21702 0.94711 1.01287 1.02260 1.20772 0.96208 0.92434 1.03670 1.18895 0.90971 0.95235 0.89905 1.18766 1.28418 1.00308 0.88643 1.24486 0.91780 0.92529 0.91396 1.81152 1.13352 1.09227 1.11018 1.83442 1.73179 1.10945 1.00465 1.22394 1.02122 0.97576 0.94860 1.19601 1.15861 0.98740 0.90946 1.20566 0.96216 0.96084 0.94502 1.21062 1.07670 0.92424 0.99154 1.18441 0.86136 0.92095 0.87474 1.20113 1.21363 0.99189 1.04703 0.87643 1.26168 0.93718 1.00560 0.94875 1.69733 1.18497 1.37757 1.12422 0.86204 0.80599 0.80304 0.79155 1.18204 1.19773 1.18139 1.18766 1.13736 0.93821 0.93591 0.91273 0.93353 0.92735 0.92516 0.87474 0.88545 0.88200 0.86095 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.14 37.16 0.34 -1.99 16 2 C -0.09 -1.69 5.14 -27.89 -0.14 -1.83 16 3 C 0.07 1.35 5.14 -105.19 -0.54 0.81 16 4 C -0.24 -4.91 6.24 -38.61 -0.24 -5.15 16 5 C 0.31 6.22 14.70 -22.47 -0.33 5.89 16 6 N -0.47 -9.62 18.54 41.84 0.78 -8.84 16 7 S 0.06 1.07 23.23 -107.50 -2.50 -1.43 16 8 C -0.05 -1.14 6.48 -38.37 -0.25 -1.39 16 9 C -0.22 -4.56 10.02 -39.08 -0.39 -4.95 16 10 C -0.05 -1.05 9.95 -39.85 -0.40 -1.45 16 11 C -0.18 -4.00 8.59 -39.01 -0.34 -4.34 16 12 C 0.16 3.73 5.67 -104.25 -0.59 3.13 16 13 C -0.43 -9.19 7.16 -38.05 -0.27 -9.46 16 14 H 0.11 2.11 3.77 -52.49 -0.20 1.91 16 15 C 0.07 1.44 5.24 -17.30 -0.09 1.35 16 16 N -0.76 -16.49 11.14 55.56 0.62 -15.87 16 17 Si 0.91 15.55 29.57 -169.99 -5.03 10.52 16 18 H -0.26 -4.36 7.11 56.52 0.40 -3.96 16 19 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 20 H -0.26 -4.34 7.11 56.52 0.40 -3.94 16 21 C -0.19 -4.29 6.00 -104.82 -0.63 -4.92 16 22 H 0.07 1.17 6.98 -51.93 -0.36 0.81 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.00 7.40 -51.93 -0.38 0.62 16 26 H 0.11 2.04 5.41 -51.93 -0.28 1.75 16 27 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.12 2.69 6.58 -52.48 -0.35 2.35 16 30 H 0.29 5.72 8.29 -40.82 -0.34 5.38 16 LS Contribution 274.11 15.07 4.13 4.13 Total: -1.00 -23.43 274.11 -8.27 -31.70 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -2.40 Total: 4.08 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -3.87 Total: -24.29 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 1.39 Total: -24.71 kcal Atomic # 14 Polarization: 15.55 SS G_CDS: -5.03 Total: 10.52 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.50 Total: -1.43 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -23.43 -8.27 -31.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.084 kcal (2) G-P(sol) polarization free energy of solvation -23.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds