Wall clock time and date at job start Mon Mar 30 2020 06:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47273 * 2 1 4 4 C 1.35495 * 119.64699 * 265.00491 * 3 2 1 5 5 C 1.40395 * 120.48736 * 180.02562 * 4 3 2 6 6 C 1.43199 * 120.04899 * 180.02562 * 5 4 3 7 7 N 5.93298 * 108.60946 * 322.45329 * 2 1 3 8 8 C 1.39266 * 119.89716 * 359.97438 * 5 4 3 9 9 C 1.39192 * 120.16743 * 359.97438 * 8 5 4 10 10 S 1.76012 * 130.12122 * 179.97438 * 9 8 5 11 11 C 1.75454 * 91.76469 * 180.02562 * 10 9 8 12 12 C 1.39790 * 124.82932 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99556 * 179.97438 * 12 11 10 14 14 C 1.40302 * 120.00415 * 359.97438 * 12 11 10 15 15 N 1.30671 * 120.00196 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99989 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46995 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47112 * 119.99885 * 16 14 12 19 19 H 1.48492 * 109.47307 * 239.99946 * 16 14 12 20 20 C 1.37132 * 110.33207 * 359.97438 * 11 10 9 21 21 C 1.39504 * 115.08825 * 0.02562 * 20 11 10 22 22 H 1.08995 * 109.47043 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46971 * 300.00125 * 1 2 3 24 24 H 1.09001 * 109.47473 * 60.00098 * 1 2 3 25 25 H 1.09003 * 109.46971 * 239.99875 * 2 1 3 26 26 H 1.09001 * 109.47473 * 119.99902 * 2 1 3 27 27 H 1.07993 * 119.75252 * 0.26695 * 4 3 2 28 28 H 1.07992 * 119.91881 * 179.97438 * 8 5 4 29 29 H 0.97003 * 120.00597 * 179.97438 * 15 14 12 30 30 H 1.08003 * 122.45622 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3525 2.0185 -1.1731 5 6 2.8226 3.3413 -1.1936 6 6 3.1577 3.9640 -2.4388 7 7 3.4233 4.4581 -3.4266 8 6 2.9616 4.0471 -0.0011 9 6 2.6352 3.4446 1.2105 10 16 2.7086 4.0811 2.8498 11 6 2.1120 2.5733 3.5200 12 6 1.9000 2.3329 4.8806 13 1 1.5289 1.3729 5.2079 14 6 2.1691 3.3387 5.8211 15 7 2.6185 4.5001 5.4252 16 14 1.8851 3.0176 7.6392 17 1 1.3773 1.6343 7.8241 18 1 3.1645 3.1772 8.3759 19 1 0.8882 3.9855 8.1630 20 6 1.8823 1.6648 2.5188 21 6 2.1635 2.1204 1.2306 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2414 1.4747 -2.0995 28 1 3.3237 5.0644 -0.0164 29 1 2.8043 5.1956 6.0753 30 1 1.5109 0.6695 2.7134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212267.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:13 Heat of formation + Delta-G solvation = 25.569852 kcal Electronic energy + Delta-G solvation = -15546.574979 eV Core-core repulsion = 13010.290355 eV Total energy + Delta-G solvation = -2536.284624 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.80811 -36.08786 -35.11583 -33.47611 -33.20144 -29.43484 -28.73512 -26.08849 -23.25555 -22.84522 -20.97467 -19.69251 -17.95426 -17.45762 -15.76010 -15.26873 -15.02710 -14.32633 -13.71382 -13.29652 -13.17366 -13.12296 -12.95489 -12.49354 -12.19389 -12.09610 -11.90534 -11.65637 -11.51484 -11.40292 -11.25097 -10.72888 -10.62667 -10.41648 -10.30569 -9.88251 -9.48473 -9.22012 -8.51350 -7.56308 -7.42260 -6.56769 -4.90647 1.50668 2.25878 2.58235 2.72376 2.80470 3.02990 3.12844 3.35754 3.41345 3.66150 3.84906 4.50157 4.76974 4.88726 5.42709 5.57046 5.71472 5.88105 5.92891 6.16074 6.31506 6.35826 6.41102 6.42146 6.65853 6.71185 6.83153 7.01498 7.11578 7.22507 7.31020 7.54625 7.65791 7.82634 8.06843 8.14775 8.20991 9.39011 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.006228 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.583687 B = 4494.391688 C = 5448.055253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.124 4.124 4 C -0.056 4.056 5 C -0.139 4.139 6 C 0.284 3.716 7 N -0.483 5.483 8 C 0.012 3.988 9 C -0.280 4.280 10 S 0.146 5.854 11 C 0.056 3.944 12 C -0.363 4.363 13 H 0.104 0.896 14 C 0.050 3.950 15 N -0.761 5.761 16 Si 0.940 3.060 17 H -0.253 1.253 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.354 4.354 21 C 0.052 3.948 22 H 0.046 0.954 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.305 0.695 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -3.532 2.100 4.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.126 4.126 4 C -0.079 4.079 5 C -0.145 4.145 6 C -0.028 4.028 7 N -0.160 5.160 8 C -0.013 4.013 9 C -0.395 4.395 10 S 0.406 5.594 11 C -0.065 4.065 12 C -0.397 4.397 13 H 0.122 0.878 14 C -0.173 4.173 15 N -0.387 5.387 16 Si 0.762 3.238 17 H -0.176 1.176 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.378 4.378 21 C 0.043 3.957 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.999 -1.190 1.265 2.003 hybrid contribution -0.598 -1.546 0.496 1.731 sum -1.597 -2.737 1.760 3.625 Atomic orbital electron populations 1.21726 0.95740 1.00481 1.02192 1.20301 0.95478 0.93394 1.01537 1.19121 1.05845 0.96010 0.91588 1.19961 0.98388 0.92617 0.96893 1.15340 1.17673 0.95614 0.85882 1.25948 0.91758 0.92352 0.92703 1.81117 1.13250 1.09974 1.11701 1.20120 0.94576 0.97253 0.89391 1.23469 1.15118 0.99984 1.00889 1.84924 1.69815 1.14753 0.89911 1.21570 0.93903 0.94521 0.96469 1.19546 1.30821 0.99963 0.89378 0.87797 1.26436 0.92624 0.93884 1.04387 1.68592 1.27537 1.03788 1.38734 0.85668 0.79490 0.80550 0.78046 1.17643 1.19001 1.19000 1.19651 1.26405 1.01709 0.89993 1.17956 0.93176 0.91556 0.92964 0.93496 0.92159 0.93184 0.92427 0.91426 0.87366 0.87260 0.88104 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 37.16 0.37 -1.73 16 2 C -0.07 -1.10 5.76 -27.88 -0.16 -1.26 16 3 C -0.12 -2.34 5.17 -104.10 -0.54 -2.88 16 4 C -0.06 -1.02 9.24 -39.75 -0.37 -1.39 16 5 C -0.14 -2.63 5.74 -106.78 -0.61 -3.24 16 6 C 0.28 5.39 15.32 -22.48 -0.34 5.05 16 7 N -0.48 -9.64 18.54 41.84 0.78 -8.86 16 8 C 0.01 0.23 9.77 -38.85 -0.38 -0.15 16 9 C -0.28 -6.11 6.46 -38.34 -0.25 -6.36 16 10 S 0.15 3.26 20.13 -107.50 -2.16 1.09 16 11 C 0.06 1.29 6.11 -39.40 -0.24 1.05 16 12 C -0.36 -8.02 9.27 -38.23 -0.35 -8.37 16 13 H 0.10 2.15 7.85 -52.48 -0.41 1.73 16 14 C 0.05 1.03 5.50 -17.27 -0.09 0.93 16 15 N -0.76 -16.10 10.58 55.57 0.59 -15.51 16 16 Si 0.94 15.16 29.56 -169.99 -5.03 10.13 16 17 H -0.25 -4.03 7.11 56.52 0.40 -3.63 16 18 H -0.27 -4.24 7.11 56.52 0.40 -3.84 16 19 H -0.27 -4.24 7.11 56.52 0.40 -3.84 16 20 C -0.35 -7.91 9.56 -39.51 -0.38 -8.29 16 21 C 0.05 1.13 5.82 -107.03 -0.62 0.51 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.80 8.01 -51.93 -0.42 0.38 16 26 H 0.07 1.09 7.35 -51.93 -0.38 0.71 16 27 H 0.11 1.71 8.03 -52.49 -0.42 1.29 16 28 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.31 5.71 8.29 -40.82 -0.34 5.37 16 30 H 0.11 2.37 7.46 -52.48 -0.39 1.98 16 LS Contribution 283.22 15.07 4.27 4.27 Total: -1.00 -23.93 283.22 -8.38 -32.30 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -2.85 Total: 2.70 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -3.97 Total: -26.12 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 1.36 Total: -24.38 kcal Atomic # 14 Polarization: 15.16 SS G_CDS: -5.03 Total: 10.13 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -2.16 Total: 1.09 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -23.93 -8.38 -32.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212267.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.875 kcal (2) G-P(sol) polarization free energy of solvation -23.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds