Wall clock time and date at job start Mon Mar 30 2020 06:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.47273 * 2 1 4 4 C 1.35495 * 119.64699 * 265.00491 * 3 2 1 5 5 C 1.40395 * 120.48736 * 180.02562 * 4 3 2 6 6 C 1.43199 * 120.04899 * 180.02562 * 5 4 3 7 7 N 5.93298 * 108.60946 * 322.45329 * 2 1 3 8 8 C 1.39266 * 119.89716 * 359.97438 * 5 4 3 9 9 C 1.39192 * 120.16743 * 359.97438 * 8 5 4 10 10 S 1.76012 * 130.12122 * 179.97438 * 9 8 5 11 11 C 1.75454 * 91.76469 * 180.02562 * 10 9 8 12 12 C 1.39790 * 124.82932 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99556 * 179.97438 * 12 11 10 14 14 C 1.40302 * 120.00415 * 359.97438 * 12 11 10 15 15 N 1.30671 * 120.00196 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99989 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46995 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47112 * 119.99885 * 16 14 12 19 19 H 1.48492 * 109.47307 * 239.99946 * 16 14 12 20 20 C 1.37132 * 110.33207 * 359.97438 * 11 10 9 21 21 C 1.39504 * 115.08825 * 0.02562 * 20 11 10 22 22 H 1.08995 * 109.47043 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46971 * 300.00125 * 1 2 3 24 24 H 1.09001 * 109.47473 * 60.00098 * 1 2 3 25 25 H 1.09003 * 109.46971 * 239.99875 * 2 1 3 26 26 H 1.09001 * 109.47473 * 119.99902 * 2 1 3 27 27 H 1.07993 * 119.75252 * 0.26695 * 4 3 2 28 28 H 1.07992 * 119.91881 * 179.97438 * 8 5 4 29 29 H 0.97003 * 120.00597 * 179.97438 * 15 14 12 30 30 H 1.08003 * 122.45622 * 180.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3525 2.0185 -1.1731 5 6 2.8226 3.3413 -1.1936 6 6 3.1577 3.9640 -2.4388 7 7 3.4233 4.4581 -3.4266 8 6 2.9616 4.0471 -0.0011 9 6 2.6352 3.4446 1.2105 10 16 2.7086 4.0811 2.8498 11 6 2.1120 2.5733 3.5200 12 6 1.9000 2.3329 4.8806 13 1 1.5289 1.3729 5.2079 14 6 2.1691 3.3387 5.8211 15 7 2.6185 4.5001 5.4252 16 14 1.8851 3.0176 7.6392 17 1 1.3773 1.6343 7.8241 18 1 3.1645 3.1772 8.3759 19 1 0.8882 3.9855 8.1630 20 6 1.8823 1.6648 2.5188 21 6 2.1635 2.1204 1.2306 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2414 1.4747 -2.0995 28 1 3.3237 5.0644 -0.0164 29 1 2.8043 5.1956 6.0753 30 1 1.5109 0.6695 2.7134 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212267.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:13 Heat of formation + Delta-G solvation = 17.035475 kcal Electronic energy + Delta-G solvation = -15546.945058 eV Core-core repulsion = 13010.290355 eV Total energy + Delta-G solvation = -2536.654702 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35978 -37.66988 -36.70122 -34.93756 -34.70581 -31.04931 -30.15227 -27.69283 -24.68545 -24.36836 -22.47181 -21.29874 -19.58332 -18.97113 -17.27918 -16.85135 -16.55885 -15.79325 -15.12751 -14.79780 -14.64692 -14.56033 -14.39161 -14.03417 -13.72473 -13.59497 -13.33384 -13.19552 -12.98108 -12.87439 -12.58704 -12.15587 -11.94506 -11.88619 -11.65500 -11.40706 -11.03452 -10.87983 -10.08140 -9.20616 -8.96737 -8.24849 -6.57011 -0.08543 0.71430 1.15885 1.35682 1.39433 1.58278 1.67386 1.78165 1.92455 2.13783 2.28777 2.90313 3.19963 3.28834 4.02321 4.23407 4.37262 4.51886 4.69707 4.75943 4.86327 4.89634 5.03900 5.13733 5.19811 5.30431 5.42474 5.50867 5.54228 5.62645 5.74730 5.95753 6.04227 6.23919 6.44565 6.50539 6.65033 7.88367 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.006228 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.583687 B = 4494.391688 C = 5448.055253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C -0.125 4.125 4 C -0.054 4.054 5 C -0.129 4.129 6 C 0.298 3.702 7 N -0.494 5.494 8 C 0.004 3.996 9 C -0.299 4.299 10 S 0.123 5.877 11 C 0.029 3.971 12 C -0.389 4.389 13 H 0.110 0.890 14 C 0.017 3.983 15 N -0.787 5.787 16 Si 1.011 2.989 17 H -0.250 1.250 18 H -0.260 1.260 19 H -0.260 1.260 20 C -0.371 4.371 21 C 0.035 3.965 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.140 0.860 28 H 0.122 0.878 29 H 0.315 0.685 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 -4.396 1.713 5.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 C -0.127 4.127 4 C -0.076 4.076 5 C -0.135 4.135 6 C -0.013 4.013 7 N -0.171 5.171 8 C -0.021 4.021 9 C -0.414 4.414 10 S 0.383 5.617 11 C -0.091 4.091 12 C -0.423 4.423 13 H 0.128 0.872 14 C -0.203 4.203 15 N -0.412 5.412 16 Si 0.829 3.171 17 H -0.173 1.173 18 H -0.184 1.184 19 H -0.184 1.184 20 C -0.395 4.395 21 C 0.026 3.974 22 H 0.090 0.910 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.129 0.871 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.295 -2.053 0.854 2.573 hybrid contribution -0.485 -1.261 0.477 1.433 sum -1.780 -3.314 1.331 3.990 Atomic orbital electron populations 1.21680 0.94721 1.01915 1.01337 1.20369 0.96277 0.91457 1.02527 1.19481 1.05002 0.97461 0.90730 1.20281 0.97202 0.92270 0.97851 1.15428 1.16702 0.95960 0.85445 1.25773 0.91323 0.91908 0.92340 1.81144 1.13503 1.10317 1.12176 1.20281 0.94667 0.98008 0.89132 1.23608 1.16262 1.00484 1.00998 1.84758 1.70572 1.15293 0.91047 1.21894 0.94838 0.94925 0.97437 1.19879 1.31795 1.00989 0.89611 0.87217 1.27330 0.91606 0.93143 1.08268 1.68620 1.27533 1.04597 1.40455 0.84655 0.79498 0.80485 0.72442 1.17283 1.18409 1.18405 1.19748 1.27488 1.01829 0.90481 1.18242 0.93455 0.91900 0.93793 0.90958 0.94434 0.92576 0.89713 0.92122 0.84264 0.86039 0.87072 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.89 71.98 0.71 -3.06 16 2 C -0.07 -2.04 5.76 29.85 0.17 -1.86 16 3 C -0.12 -4.55 5.17 -19.52 -0.10 -4.65 16 4 C -0.05 -1.82 9.24 22.16 0.20 -1.62 16 5 C -0.13 -4.66 5.74 -21.26 -0.12 -4.78 16 6 C 0.30 10.67 15.32 88.33 1.35 12.02 16 7 N -0.49 -18.66 18.54 19.00 0.35 -18.31 16 8 C 0.00 0.16 9.77 22.75 0.22 0.38 16 9 C -0.30 -13.21 6.46 23.07 0.15 -13.06 16 10 S 0.12 5.70 20.13 -56.49 -1.14 4.57 16 11 C 0.03 1.40 6.11 22.39 0.14 1.53 16 12 C -0.39 -17.60 9.27 23.15 0.21 -17.39 16 13 H 0.11 4.63 7.85 -2.91 -0.02 4.61 16 14 C 0.02 0.71 5.50 85.37 0.47 1.18 16 15 N -0.79 -33.71 10.58 21.89 0.23 -33.48 16 16 Si 1.01 30.41 29.56 68.60 2.03 32.44 16 17 H -0.25 -7.30 7.11 99.48 0.71 -6.59 16 18 H -0.26 -7.54 7.11 99.48 0.71 -6.83 16 19 H -0.26 -7.53 7.11 99.48 0.71 -6.83 16 20 C -0.37 -17.08 9.56 22.31 0.21 -16.87 16 21 C 0.03 1.51 5.82 -21.43 -0.12 1.39 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.08 2.05 8.01 -2.39 -0.02 2.03 16 26 H 0.06 1.88 7.35 -2.39 -0.02 1.86 16 27 H 0.14 3.84 8.03 -2.91 -0.02 3.82 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.32 11.83 8.29 -92.71 -0.77 11.06 16 30 H 0.11 4.96 7.46 -2.91 -0.02 4.94 16 Total: -1.00 -51.17 283.22 6.14 -45.03 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 1.17 Total: 16.54 kcal Atomic # 6 Polarization: -50.28 SS G_CDS: 3.50 Total: -46.78 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.58 Total: -51.79 kcal Atomic # 14 Polarization: 30.41 SS G_CDS: 2.03 Total: 32.44 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.14 Total: 4.57 kcal Total: -51.17 6.14 -45.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212267.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.064 kcal (2) G-P(sol) polarization free energy of solvation -51.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds