Wall clock time and date at job start Mon Mar 30 2020 06:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.47003 * 2 1 4 4 C 1.35356 * 122.28333 * 270.01764 * 3 2 1 5 5 C 1.43196 * 124.74195 * 0.02562 * 4 3 2 6 6 N 3.71714 * 96.30053 * 288.26124 * 2 1 3 7 7 S 1.75463 * 110.52203 * 179.97438 * 4 3 2 8 8 C 1.76046 * 91.66884 * 359.84445 * 7 4 3 9 9 C 1.38962 * 130.20100 * 179.58613 * 8 7 4 10 10 C 1.40345 * 120.02319 * 180.26412 * 9 8 7 11 11 C 1.40863 * 120.18091 * 180.27155 * 10 9 8 12 12 H 1.08002 * 119.99734 * 154.37149 * 11 10 9 13 13 C 1.40016 * 120.00259 * 334.37406 * 11 10 9 14 14 N 1.30787 * 120.00030 * 343.15669 * 13 11 10 15 15 Si 1.86802 * 120.00244 * 163.15912 * 13 11 10 16 16 H 1.48499 * 109.46957 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47238 * 119.99764 * 15 13 11 18 18 H 1.48497 * 109.47022 * 239.99981 * 15 13 11 19 19 C 1.41372 * 119.63768 * 0.25327 * 10 9 8 20 20 C 1.35034 * 120.40111 * 0.02562 * 19 10 9 21 21 C 1.39780 * 122.29260 * 90.00270 * 3 2 1 22 22 H 1.09006 * 109.47643 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47341 * 300.00540 * 1 2 3 24 24 H 1.08998 * 109.47553 * 60.00044 * 1 2 3 25 25 H 1.08995 * 109.46950 * 239.99531 * 2 1 3 26 26 H 1.09004 * 109.46703 * 119.99835 * 2 1 3 27 27 H 1.08003 * 119.99145 * 0.53517 * 9 8 7 28 28 H 0.97008 * 120.00273 * 180.02562 * 14 13 11 29 29 H 1.08000 * 119.80381 * 179.97438 * 19 10 9 30 30 H 1.07994 * 119.56412 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2729 2.1025 -1.1443 5 6 2.0857 1.5758 -2.4627 6 7 1.9379 1.1577 -3.5086 7 16 2.8449 3.7222 -0.7867 8 6 2.7378 3.4329 0.9466 9 6 3.0384 4.2682 2.0156 10 6 2.8767 3.8096 3.3322 11 6 3.1750 4.6555 4.4183 12 1 2.6915 4.5010 5.3717 13 6 4.0983 5.6964 4.2621 14 7 4.9198 5.6947 3.2444 15 14 4.1568 7.0878 5.5072 16 1 3.1312 6.8569 6.5560 17 1 5.5029 7.1361 6.1326 18 1 3.8826 8.3766 4.8225 19 6 2.4123 2.4943 3.5622 20 6 2.1251 1.6797 2.5243 21 6 2.2812 2.1248 1.1816 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.3926 5.2721 1.8334 28 1 5.5597 6.4157 3.1364 29 1 2.2872 2.1386 4.5742 30 1 1.7709 0.6776 2.7156 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:04 Heat of formation + Delta-G solvation = 33.149285 kcal Electronic energy + Delta-G solvation = -15643.874919 eV Core-core repulsion = 13107.918964 eV Total energy + Delta-G solvation = -2535.955955 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33574 -38.14663 -36.89610 -35.19417 -32.93442 -31.24245 -30.72181 -27.65625 -25.36986 -23.87930 -22.85089 -20.94618 -19.58953 -18.90079 -17.46014 -17.07638 -16.26443 -15.72981 -15.32142 -15.08909 -14.91216 -14.54803 -14.19703 -14.08176 -13.97198 -13.61505 -13.29735 -13.23467 -12.91090 -12.76733 -12.66701 -12.34626 -11.89015 -11.71799 -11.60026 -11.55577 -11.21626 -10.94266 -10.17756 -9.22944 -8.81051 -8.41998 -6.40535 -0.33705 0.56004 0.97081 1.18525 1.22488 1.42898 1.57738 1.59604 2.02185 2.15805 2.31239 2.67186 3.09301 3.56694 3.97437 4.18125 4.29847 4.46954 4.61099 4.71396 4.84393 4.95561 4.97721 5.04967 5.14632 5.24523 5.32877 5.40126 5.46339 5.81032 5.87283 6.00959 6.10844 6.47236 6.48509 6.71228 6.82014 8.12076 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.005904 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.491328 B = 4741.721916 C = 5439.240881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 C 0.056 3.944 4 C -0.239 4.239 5 C 0.317 3.683 6 N -0.472 5.472 7 S 0.057 5.943 8 C -0.072 4.072 9 C -0.194 4.194 10 C 0.106 3.894 11 C -0.445 4.445 12 H 0.101 0.899 13 C 0.033 3.967 14 N -0.795 5.795 15 Si 0.986 3.014 16 H -0.248 1.248 17 H -0.265 1.265 18 H -0.268 1.268 19 C -0.203 4.203 20 C -0.032 4.032 21 C -0.226 4.226 22 H 0.083 0.917 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.296 0.704 29 H 0.127 0.873 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -3.634 2.747 5.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 C 0.040 3.960 4 C -0.357 4.357 5 C 0.005 3.995 6 N -0.152 5.152 7 S 0.321 5.679 8 C -0.188 4.188 9 C -0.221 4.221 10 C 0.099 3.901 11 C -0.473 4.473 12 H 0.119 0.881 13 C -0.187 4.187 14 N -0.418 5.418 15 Si 0.806 3.194 16 H -0.171 1.171 17 H -0.190 1.190 18 H -0.193 1.193 19 C -0.222 4.222 20 C -0.052 4.052 21 C -0.231 4.231 22 H 0.102 0.898 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.108 0.892 29 H 0.145 0.855 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.278 -2.980 0.000 4.430 hybrid contribution 0.156 0.067 1.350 1.360 sum -3.122 -2.913 1.349 4.478 Atomic orbital electron populations 1.21668 0.93023 1.02965 1.01860 1.20549 0.97389 0.89968 1.03753 1.19256 0.91016 0.96429 0.89311 1.18885 1.27363 1.00541 0.88873 1.24399 0.91553 0.92307 0.91250 1.81172 1.13446 1.09624 1.10932 1.83626 1.73238 1.11238 0.99800 1.22690 1.02275 0.98188 0.95673 1.20466 1.11754 0.99136 0.90769 1.17914 0.88005 0.91817 0.92356 1.20203 1.18775 1.09751 0.98568 0.88124 1.26979 0.92895 1.00690 0.98131 1.69857 1.12817 1.30968 1.28125 0.85067 0.79685 0.76484 0.78154 1.17111 1.18963 1.19278 1.21002 1.08242 0.93980 0.98959 1.20650 0.95741 0.99259 0.89538 1.17656 1.17215 0.94224 0.94043 0.89835 0.91977 0.94107 0.91302 0.88360 0.87821 0.89241 0.85536 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.89 71.98 0.71 -2.55 16 2 C -0.08 -2.09 5.69 29.85 0.17 -1.92 16 3 C 0.06 1.98 5.15 -20.16 -0.10 1.88 16 4 C -0.24 -8.98 6.23 22.85 0.14 -8.84 16 5 C 0.32 11.71 14.72 88.33 1.30 13.02 16 6 N -0.47 -17.92 18.54 19.00 0.35 -17.56 16 7 S 0.06 2.31 23.22 -56.49 -1.31 1.00 16 8 C -0.07 -3.23 6.45 23.00 0.15 -3.08 16 9 C -0.19 -9.37 8.71 22.96 0.20 -9.17 16 10 C 0.11 4.93 5.56 -21.35 -0.12 4.81 16 11 C -0.45 -20.15 9.03 23.34 0.21 -19.94 16 12 H 0.10 4.18 7.90 -2.91 -0.02 4.16 16 13 C 0.03 1.42 5.14 85.28 0.44 1.86 16 14 N -0.79 -37.03 10.96 21.84 0.24 -36.79 16 15 Si 0.99 32.58 29.59 68.60 2.03 34.61 16 16 H -0.25 -7.81 7.11 99.48 0.71 -7.10 16 17 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 18 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 19 C -0.20 -8.11 9.68 22.30 0.22 -7.89 16 20 C -0.03 -1.15 9.58 22.55 0.22 -0.93 16 21 C -0.23 -9.00 5.85 -21.33 -0.12 -9.13 16 22 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.84 7.47 -2.39 -0.02 1.82 16 26 H 0.10 2.29 7.29 -2.39 -0.02 2.27 16 27 H 0.10 5.34 6.17 -2.91 -0.02 5.33 16 28 H 0.30 12.42 8.30 -92.70 -0.77 11.65 16 29 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.14 3.92 7.35 -2.91 -0.02 3.90 16 Total: -1.00 -51.97 282.27 5.89 -46.08 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 1.17 Total: 14.56 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 3.41 Total: -41.89 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.59 Total: -54.36 kcal Atomic # 14 Polarization: 32.58 SS G_CDS: 2.03 Total: 34.61 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.31 Total: 1.00 kcal Total: -51.97 5.89 -46.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.228 kcal (2) G-P(sol) polarization free energy of solvation -51.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds