Wall clock time and date at job start Mon Mar 30 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47073 * 2 1 4 4 C 1.37769 * 119.45128 * 270.02201 * 3 2 1 5 5 C 1.39451 * 121.34410 * 179.97438 * 4 3 2 6 6 S 1.76019 * 130.27972 * 180.02562 * 5 4 3 7 7 C 1.75484 * 91.74835 * 179.49634 * 6 5 4 8 8 C 1.39739 * 124.87181 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99811 * 180.51557 * 8 7 6 10 10 C 1.40329 * 120.00500 * 0.52302 * 8 7 6 11 11 N 1.30667 * 119.99394 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00300 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47409 * 89.99381 * 12 10 8 14 14 H 1.48500 * 109.46949 * 209.99700 * 12 10 8 15 15 H 1.48504 * 109.47216 * 329.99303 * 12 10 8 16 16 C 1.37275 * 110.24743 * 0.40093 * 7 6 5 17 17 C 1.39078 * 115.06697 * 359.57099 * 16 7 6 18 18 C 1.47573 * 128.85288 * 180.02562 * 17 16 7 19 19 C 1.43205 * 120.32341 * 359.97438 * 18 17 16 20 20 N 5.94914 * 105.75003 * 37.16933 * 2 1 3 21 21 C 1.38307 * 119.44951 * 90.00386 * 3 2 1 22 22 H 1.09003 * 109.47199 * 59.99890 * 1 2 3 23 23 H 1.08993 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46750 * 300.00072 * 1 2 3 25 25 H 1.09000 * 109.46883 * 240.00463 * 2 1 3 26 26 H 1.08997 * 109.47203 * 120.00580 * 2 1 3 27 27 H 1.07996 * 119.32602 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99701 * 180.02562 * 11 10 8 29 29 H 1.08009 * 122.46213 * 179.54984 * 16 7 6 30 30 H 1.07997 * 119.86375 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2577 2.0597 -1.1997 5 6 2.7218 3.3739 -1.2457 6 16 3.0849 4.4048 -2.6254 7 6 3.5398 5.7374 -1.5782 8 6 3.9750 6.9892 -2.0214 9 1 4.2437 7.7520 -1.3056 10 6 4.0628 7.2553 -3.3964 11 7 3.7381 6.3322 -4.2624 12 14 4.6438 8.9288 -3.9888 13 1 6.1199 8.9117 -4.1503 14 1 4.0066 9.2407 -5.2933 15 1 4.2668 9.9645 -2.9935 16 6 3.4159 5.3705 -0.2613 17 6 2.9637 4.0721 -0.0514 18 6 2.7224 3.3707 1.2243 19 6 2.9580 4.0354 2.4707 20 7 3.1449 4.5626 3.4594 21 6 2.2591 2.0619 1.2044 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0704 1.5321 -2.1232 28 1 3.7991 6.5159 -5.2129 29 1 3.6525 6.0407 0.5521 30 1 2.0751 1.5424 2.1331 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212838.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:45 Heat of formation + Delta-G solvation = 27.590967 kcal Electronic energy + Delta-G solvation = -15432.347882 eV Core-core repulsion = 12896.150900 eV Total energy + Delta-G solvation = -2536.196982 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.51411 -35.68266 -35.51855 -34.17595 -31.85772 -30.13176 -28.70651 -25.80496 -23.19902 -22.70969 -21.43291 -19.42728 -18.33609 -17.01823 -15.76920 -15.38684 -14.72710 -14.37611 -13.94615 -13.49482 -13.28060 -12.96521 -12.74092 -12.37906 -12.21240 -12.02581 -11.89977 -11.87029 -11.53323 -11.34870 -11.22553 -10.71034 -10.64571 -10.37515 -10.28389 -10.06414 -9.46394 -9.27136 -8.49441 -7.50713 -7.43447 -6.58437 -4.89338 1.47424 2.11602 2.68600 2.72837 2.79911 3.05857 3.37541 3.40163 3.46513 3.67940 3.77920 4.46564 4.87687 4.91768 5.34002 5.42873 5.63849 5.74640 5.84865 6.04725 6.14609 6.17423 6.34295 6.41137 6.50393 6.67094 6.86964 6.93724 7.14213 7.27622 7.34431 7.48616 7.65467 7.80312 8.04015 8.15497 8.34780 9.37842 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.006168 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.886538 B = 4538.724368 C = 5511.424528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.184 4.184 4 C -0.007 4.007 5 C -0.274 4.274 6 S 0.146 5.854 7 C 0.058 3.942 8 C -0.360 4.360 9 H 0.104 0.896 10 C 0.051 3.949 11 N -0.760 5.760 12 Si 0.942 3.058 13 H -0.260 1.260 14 H -0.268 1.268 15 H -0.254 1.254 16 C -0.361 4.361 17 C 0.067 3.933 18 C -0.109 4.109 19 C 0.286 3.714 20 N -0.480 5.480 21 C -0.028 4.028 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.306 0.694 29 H 0.107 0.893 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 -5.056 -3.002 6.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.187 4.187 4 C -0.030 4.030 5 C -0.389 4.389 6 S 0.406 5.594 7 C -0.062 4.062 8 C -0.393 4.393 9 H 0.122 0.878 10 C -0.173 4.173 11 N -0.385 5.385 12 Si 0.764 3.236 13 H -0.185 1.185 14 H -0.193 1.193 15 H -0.177 1.177 16 C -0.385 4.385 17 C 0.057 3.943 18 C -0.115 4.115 19 C -0.025 4.025 20 N -0.157 5.157 21 C -0.051 4.051 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.990 -4.460 -3.245 5.864 hybrid contribution 0.227 0.722 0.891 1.169 sum -1.764 -3.738 -2.354 4.757 Atomic orbital electron populations 1.21793 0.96003 1.00488 1.02099 1.20261 0.95171 0.93269 1.01535 1.18872 1.10913 0.96607 0.92314 1.20109 0.94556 0.91840 0.96467 1.23551 1.15101 0.99942 1.00266 1.84851 1.69658 1.02137 1.02743 1.21529 0.94013 0.96278 0.94384 1.19539 1.30373 0.97039 0.92365 0.87804 1.26456 0.93305 1.01049 0.96521 1.68590 1.30501 1.34102 1.05259 0.85685 0.79877 0.79008 0.79054 1.18478 1.19274 1.17734 1.19533 1.26773 0.97030 0.95196 1.18628 0.93277 0.92587 0.89827 1.16645 1.15561 0.94301 0.85003 1.25815 0.91964 0.92364 0.92407 1.81075 1.12652 1.09642 1.12362 1.20375 0.95787 0.91926 0.97038 0.92731 0.93452 0.92860 0.92027 0.92139 0.87642 0.88007 0.87450 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.90 37.16 0.37 -1.40 16 2 C -0.06 -0.86 6.03 -27.88 -0.17 -1.03 16 3 C -0.18 -3.15 5.12 -104.77 -0.54 -3.68 16 4 C -0.01 -0.13 9.62 -39.30 -0.38 -0.50 16 5 C -0.27 -6.03 6.47 -38.30 -0.25 -6.28 16 6 S 0.15 3.30 20.14 -107.50 -2.16 1.13 16 7 C 0.06 1.42 6.12 -39.37 -0.24 1.18 16 8 C -0.36 -8.31 9.27 -38.24 -0.35 -8.67 16 9 H 0.10 2.28 7.85 -52.49 -0.41 1.87 16 10 C 0.05 1.06 5.50 -17.26 -0.09 0.97 16 11 N -0.76 -16.22 10.58 55.57 0.59 -15.64 16 12 Si 0.94 15.62 29.56 -169.99 -5.03 10.59 16 13 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 14 H -0.27 -4.31 7.11 56.52 0.40 -3.91 16 15 H -0.25 -4.22 7.11 56.52 0.40 -3.82 16 16 C -0.36 -8.87 9.77 -39.62 -0.39 -9.26 16 17 C 0.07 1.55 6.00 -104.95 -0.63 0.92 16 18 C -0.11 -2.30 5.95 -103.94 -0.62 -2.92 16 19 C 0.29 6.16 15.07 -22.47 -0.34 5.82 16 20 N -0.48 -10.68 18.54 41.83 0.78 -9.90 16 21 C -0.03 -0.51 9.34 -39.33 -0.37 -0.88 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 26 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 27 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.31 5.77 8.29 -40.82 -0.34 5.43 16 29 H 0.11 2.66 8.02 -52.48 -0.42 2.24 16 30 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 285.15 15.07 4.30 4.30 Total: -1.00 -25.05 285.15 -8.44 -33.49 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -2.92 Total: 1.74 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -3.99 Total: -25.72 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 1.36 Total: -25.54 kcal Atomic # 14 Polarization: 15.62 SS G_CDS: -5.03 Total: 10.59 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.16 Total: 1.13 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.05 -8.44 -33.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212838.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.081 kcal (2) G-P(sol) polarization free energy of solvation -25.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds