Wall clock time and date at job start Mon Mar 30 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.47073 * 2 1 4 4 C 1.37769 * 119.45128 * 270.02201 * 3 2 1 5 5 C 1.39451 * 121.34410 * 179.97438 * 4 3 2 6 6 S 1.76019 * 130.27972 * 180.02562 * 5 4 3 7 7 C 1.75484 * 91.74835 * 179.49634 * 6 5 4 8 8 C 1.39739 * 124.87181 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99811 * 180.51557 * 8 7 6 10 10 C 1.40329 * 120.00500 * 0.52302 * 8 7 6 11 11 N 1.30667 * 119.99394 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00300 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47409 * 89.99381 * 12 10 8 14 14 H 1.48500 * 109.46949 * 209.99700 * 12 10 8 15 15 H 1.48504 * 109.47216 * 329.99303 * 12 10 8 16 16 C 1.37275 * 110.24743 * 0.40093 * 7 6 5 17 17 C 1.39078 * 115.06697 * 359.57099 * 16 7 6 18 18 C 1.47573 * 128.85288 * 180.02562 * 17 16 7 19 19 C 1.43205 * 120.32341 * 359.97438 * 18 17 16 20 20 N 5.94914 * 105.75003 * 37.16933 * 2 1 3 21 21 C 1.38307 * 119.44951 * 90.00386 * 3 2 1 22 22 H 1.09003 * 109.47199 * 59.99890 * 1 2 3 23 23 H 1.08993 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46750 * 300.00072 * 1 2 3 25 25 H 1.09000 * 109.46883 * 240.00463 * 2 1 3 26 26 H 1.08997 * 109.47203 * 120.00580 * 2 1 3 27 27 H 1.07996 * 119.32602 * 0.02562 * 4 3 2 28 28 H 0.97000 * 119.99701 * 180.02562 * 11 10 8 29 29 H 1.08009 * 122.46213 * 179.54984 * 16 7 6 30 30 H 1.07997 * 119.86375 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2577 2.0597 -1.1997 5 6 2.7218 3.3739 -1.2457 6 16 3.0849 4.4048 -2.6254 7 6 3.5398 5.7374 -1.5782 8 6 3.9750 6.9892 -2.0214 9 1 4.2437 7.7520 -1.3056 10 6 4.0628 7.2553 -3.3964 11 7 3.7381 6.3322 -4.2624 12 14 4.6438 8.9288 -3.9888 13 1 6.1199 8.9117 -4.1503 14 1 4.0066 9.2407 -5.2933 15 1 4.2668 9.9645 -2.9935 16 6 3.4159 5.3705 -0.2613 17 6 2.9637 4.0721 -0.0514 18 6 2.7224 3.3707 1.2243 19 6 2.9580 4.0354 2.4707 20 7 3.1449 4.5626 3.4594 21 6 2.2591 2.0619 1.2044 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.0704 1.5321 -2.1232 28 1 3.7991 6.5159 -5.2129 29 1 3.6525 6.0407 0.5521 30 1 2.0751 1.5424 2.1331 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212838.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:45 Heat of formation + Delta-G solvation = 17.500807 kcal Electronic energy + Delta-G solvation = -15432.785424 eV Core-core repulsion = 12896.150900 eV Total energy + Delta-G solvation = -2536.634524 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09332 -37.36795 -37.15134 -35.70495 -33.26187 -31.71917 -30.23431 -27.34492 -24.64522 -24.27298 -22.84887 -21.10301 -19.98994 -18.58656 -17.31572 -16.95696 -16.35631 -15.87281 -15.29230 -14.95489 -14.74462 -14.42658 -14.14376 -14.00357 -13.84399 -13.57028 -13.44954 -13.31867 -12.99400 -12.93511 -12.54830 -12.01981 -11.89601 -11.82770 -11.63775 -11.56099 -11.01695 -11.01066 -10.14554 -9.16405 -9.02793 -8.29945 -6.63730 -0.15385 0.52659 1.28488 1.33247 1.36260 1.52561 1.69312 1.81319 1.89438 2.09737 2.10723 2.80073 3.23135 3.23732 4.08933 4.15021 4.41465 4.43620 4.69515 4.77038 4.79666 4.92275 5.00024 5.13098 5.22436 5.35538 5.38354 5.40269 5.56573 5.64129 5.76115 5.86846 5.97038 6.19036 6.32374 6.43906 6.63384 7.82808 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.006168 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.886538 B = 4538.724368 C = 5511.424528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C -0.164 4.164 4 C -0.009 4.009 5 C -0.291 4.291 6 S 0.145 5.855 7 C 0.030 3.970 8 C -0.391 4.391 9 H 0.101 0.899 10 C 0.020 3.980 11 N -0.779 5.779 12 Si 1.012 2.988 13 H -0.255 1.255 14 H -0.253 1.253 15 H -0.257 1.257 16 C -0.396 4.396 17 C 0.044 3.956 18 C -0.125 4.125 19 C 0.293 3.707 20 N -0.499 5.499 21 C -0.019 4.019 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.131 0.869 28 H 0.319 0.681 29 H 0.086 0.914 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -6.928 -3.717 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.167 4.167 4 C -0.032 4.032 5 C -0.406 4.406 6 S 0.405 5.595 7 C -0.090 4.090 8 C -0.424 4.424 9 H 0.119 0.881 10 C -0.202 4.202 11 N -0.404 5.404 12 Si 0.830 3.170 13 H -0.179 1.179 14 H -0.177 1.177 15 H -0.181 1.181 16 C -0.421 4.421 17 C 0.034 3.966 18 C -0.131 4.131 19 C -0.018 4.018 20 N -0.177 5.177 21 C -0.041 4.041 22 H 0.065 0.935 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.149 0.851 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.651 -6.363 -3.952 7.946 hybrid contribution 0.359 1.108 1.164 1.647 sum -2.292 -5.255 -2.788 6.375 Atomic orbital electron populations 1.21776 0.94878 1.02055 1.01572 1.20380 0.95968 0.90348 1.03450 1.19423 1.07825 0.98355 0.91100 1.20505 0.93530 0.90669 0.98465 1.23750 1.16217 1.01215 0.99374 1.84503 1.70094 1.01874 1.03070 1.21822 0.94876 0.97522 0.94823 1.19823 1.31708 0.96945 0.93906 0.88116 1.27309 0.92695 1.04587 0.95562 1.68585 1.30042 1.35626 1.06138 0.84693 0.79508 0.74070 0.78775 1.17904 1.17671 1.18092 1.19524 1.29615 0.98008 0.94939 1.18808 0.94013 0.92440 0.91360 1.16859 1.16753 0.95555 0.83913 1.25977 0.91447 0.91993 0.92374 1.81061 1.13466 1.10001 1.13167 1.20812 0.93744 0.90571 0.99015 0.93480 0.90923 0.93266 0.90400 0.90093 0.85120 0.86675 0.89564 0.83866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.90 71.98 0.71 -2.18 16 2 C -0.06 -1.39 6.03 29.85 0.18 -1.21 16 3 C -0.16 -5.08 5.12 -19.96 -0.10 -5.18 16 4 C -0.01 -0.31 9.62 22.45 0.22 -0.10 16 5 C -0.29 -12.87 6.47 23.10 0.15 -12.72 16 6 S 0.14 6.71 20.14 -56.49 -1.14 5.57 16 7 C 0.03 1.52 6.12 22.41 0.14 1.66 16 8 C -0.39 -18.94 9.27 23.14 0.21 -18.73 16 9 H 0.10 4.73 7.85 -2.91 -0.02 4.70 16 10 C 0.02 0.86 5.50 85.37 0.47 1.33 16 11 N -0.78 -33.46 10.58 21.90 0.23 -33.23 16 12 Si 1.01 31.65 29.56 68.60 2.03 33.67 16 13 H -0.25 -7.72 7.11 99.48 0.71 -7.01 16 14 H -0.25 -7.26 7.11 99.48 0.71 -6.55 16 15 H -0.26 -8.11 7.11 99.48 0.71 -7.40 16 16 C -0.40 -20.73 9.77 22.24 0.22 -20.51 16 17 C 0.04 2.08 6.00 -20.08 -0.12 1.96 16 18 C -0.12 -5.23 5.95 -19.42 -0.12 -5.35 16 19 C 0.29 12.73 15.07 88.33 1.33 14.07 16 20 N -0.50 -22.45 18.54 19.00 0.35 -22.10 16 21 C -0.02 -0.63 9.34 22.43 0.21 -0.42 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.08 1.51 8.07 -2.39 -0.02 1.49 16 26 H 0.08 1.50 8.07 -2.39 -0.02 1.48 16 27 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.32 11.84 8.29 -92.71 -0.77 11.07 16 29 H 0.09 4.66 8.02 -2.91 -0.02 4.64 16 30 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -56.32 285.15 6.14 -50.19 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.16 Total: 13.28 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 3.50 Total: -47.38 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: 0.58 Total: -55.33 kcal Atomic # 14 Polarization: 31.65 SS G_CDS: 2.03 Total: 33.67 kcal Atomic # 16 Polarization: 6.71 SS G_CDS: -1.14 Total: 5.57 kcal Total: -56.32 6.14 -50.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212838.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.687 kcal (2) G-P(sol) polarization free energy of solvation -56.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds