Wall clock time and date at job start Mon Mar 30 2020 06:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.46901 * 2 1 4 4 C 1.32459 * 124.60414 * 89.72325 * 3 2 1 5 5 C 1.40627 * 115.93090 * 179.82876 * 4 3 2 6 6 C 1.42034 * 128.23104 * 180.18714 * 5 4 3 7 7 C 1.35008 * 121.98144 * 180.29518 * 6 5 4 8 8 C 1.41286 * 120.57248 * 359.97438 * 7 6 5 9 9 C 1.40325 * 120.61621 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99674 * 154.92939 * 9 8 7 11 11 C 1.40251 * 120.00190 * 334.92978 * 9 8 7 12 12 N 1.30664 * 119.99881 * 342.65872 * 11 9 8 13 13 Si 1.86803 * 120.00090 * 162.65608 * 11 9 8 14 14 H 1.48503 * 109.46978 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46991 * 119.99940 * 13 11 9 16 16 H 1.48500 * 109.47349 * 240.00040 * 13 11 9 17 17 C 1.46313 * 118.76241 * 359.97438 * 8 7 6 18 18 C 1.43207 * 120.46994 * 180.02562 * 17 8 7 19 19 N 6.83735 * 106.83960 * 328.94496 * 2 1 3 20 20 C 1.40062 * 112.25627 * 0.44569 * 5 4 3 21 21 S 1.75475 * 124.60684 * 270.02479 * 3 2 1 22 22 H 1.09000 * 109.47399 * 60.00221 * 1 2 3 23 23 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47151 * 299.99984 * 1 2 3 25 25 H 1.09000 * 109.47399 * 119.99779 * 2 1 3 26 26 H 1.08991 * 109.47381 * 240.00215 * 2 1 3 27 27 H 1.08003 * 122.03781 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.00883 * 0.27595 * 6 5 4 29 29 H 1.08001 * 119.71200 * 180.02562 * 7 6 5 30 30 H 0.97005 * 119.99896 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2780 2.1318 1.0903 5 6 2.7459 3.4409 0.8782 6 6 3.0914 4.4188 1.8486 7 6 3.5254 5.6491 1.5010 8 6 3.6521 6.0085 0.1405 9 6 4.1036 7.2868 -0.2219 10 1 4.5780 7.4404 -1.1799 11 6 3.9387 8.3649 0.6599 12 7 3.0869 8.2772 1.6469 13 14 4.9369 9.9261 0.4235 14 1 5.8229 9.7728 -0.7584 15 1 4.0184 11.0728 0.2076 16 1 5.7623 10.1738 1.6328 17 6 3.3049 5.0227 -0.8834 18 6 3.4202 5.3480 -2.2733 19 7 3.5107 5.6062 -3.3759 20 6 2.8551 3.7512 -0.4832 21 16 2.3638 2.3607 -1.4443 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 2.1311 1.7296 2.0818 28 1 3.0041 4.1709 2.8961 29 1 3.7786 6.3644 2.2695 30 1 2.9726 9.0230 2.2566 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396212885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:07 Heat of formation + Delta-G solvation = 39.634865 kcal Electronic energy + Delta-G solvation = -15547.849437 eV Core-core repulsion = 13012.174718 eV Total energy + Delta-G solvation = -2535.674719 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.37689 -36.04474 -35.02507 -34.06110 -31.86455 -30.09560 -28.64059 -25.67927 -23.23439 -22.85077 -21.31823 -19.36571 -18.16316 -17.21598 -15.80742 -15.50895 -14.70795 -14.41333 -13.84172 -13.50183 -13.24306 -13.10053 -12.75188 -12.41363 -12.02654 -11.89769 -11.77386 -11.61726 -11.49135 -11.26946 -11.03834 -11.01506 -10.74412 -10.30283 -10.15583 -10.00951 -9.69476 -9.40817 -8.54380 -7.55636 -7.43393 -6.86464 -4.88463 1.74026 2.14732 2.42749 2.69144 2.80571 2.86800 2.88977 3.22585 3.53849 3.91791 4.14282 4.33661 5.19117 5.24187 5.34015 5.37271 5.58620 5.81511 6.00451 6.04751 6.07654 6.18524 6.37388 6.41703 6.50420 6.58347 6.75346 6.85812 7.01213 7.41369 7.43227 7.55992 7.63974 7.98752 8.17534 8.33979 8.82004 9.47576 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.005996 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.763180 B = 4668.474078 C = 5343.336108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.234 4.234 4 C -0.070 4.070 5 C -0.203 4.203 6 C -0.048 4.048 7 C -0.143 4.143 8 C 0.167 3.833 9 C -0.401 4.401 10 H 0.094 0.906 11 C 0.072 3.928 12 N -0.746 5.746 13 Si 0.921 3.079 14 H -0.253 1.253 15 H -0.266 1.266 16 H -0.263 1.263 17 C -0.185 4.185 18 C 0.297 3.703 19 N -0.505 5.505 20 C -0.013 4.013 21 S 0.024 5.976 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -5.846 4.580 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.349 4.349 4 C -0.100 4.100 5 C -0.209 4.209 6 C -0.069 4.069 7 C -0.163 4.163 8 C 0.158 3.842 9 C -0.427 4.427 10 H 0.112 0.888 11 C -0.154 4.154 12 N -0.367 5.367 13 Si 0.743 3.257 14 H -0.176 1.176 15 H -0.191 1.191 16 H -0.187 1.187 17 C -0.199 4.199 18 C -0.012 4.012 19 N -0.185 5.185 20 C -0.131 4.131 21 S 0.286 5.714 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.118 0.882 29 H 0.148 0.852 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.247 -5.700 1.581 6.045 hybrid contribution 0.332 0.945 1.945 2.188 sum -0.915 -4.755 3.526 5.990 Atomic orbital electron populations 1.21790 0.95418 1.00813 1.02376 1.19866 0.95341 0.90763 1.01872 1.23339 1.15802 1.00430 0.95326 1.19643 0.99410 0.93121 0.97818 1.17619 1.15970 0.95514 0.91791 1.20337 0.97215 0.92707 0.96614 1.20848 1.03909 0.95442 0.96064 1.18354 0.85311 0.90459 0.90055 1.19941 1.28153 0.92043 1.02573 0.88838 1.26268 0.93819 1.01972 0.93292 1.69720 1.23154 1.33116 1.10709 0.85997 0.80219 0.78988 0.80474 1.17568 1.19079 1.18744 1.15949 1.24351 0.95146 0.84417 1.25597 0.91440 0.91794 0.92365 1.81009 1.14868 1.10083 1.12542 1.22147 1.00386 0.95001 0.95578 1.83856 1.71723 1.06061 1.09787 0.92633 0.93026 0.92557 0.91141 0.91857 0.86086 0.88178 0.85159 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.15 0.37 -1.43 16 2 C -0.04 -0.53 6.39 -27.89 -0.18 -0.71 16 3 C -0.23 -4.09 5.68 -36.23 -0.21 -4.30 16 4 C -0.07 -1.28 9.96 -40.60 -0.40 -1.69 16 5 C -0.20 -4.26 5.88 -106.86 -0.63 -4.89 16 6 C -0.05 -0.98 9.91 -39.28 -0.39 -1.37 16 7 C -0.14 -3.16 8.58 -39.57 -0.34 -3.50 16 8 C 0.17 3.98 5.72 -104.71 -0.60 3.38 16 9 C -0.40 -9.41 8.55 -38.04 -0.33 -9.73 16 10 H 0.09 2.23 7.38 -52.48 -0.39 1.84 16 11 C 0.07 1.53 5.15 -17.29 -0.09 1.44 16 12 N -0.75 -15.99 10.97 55.56 0.61 -15.38 16 13 Si 0.92 16.07 29.60 -169.99 -5.03 11.04 16 14 H -0.25 -4.54 7.11 56.52 0.40 -4.13 16 15 H -0.27 -4.60 7.11 56.52 0.40 -4.20 16 16 H -0.26 -4.40 7.11 56.52 0.40 -3.99 16 17 C -0.18 -4.45 5.97 -103.80 -0.62 -5.07 16 18 C 0.30 7.33 14.04 -22.47 -0.32 7.01 16 19 N -0.51 -12.64 18.54 41.84 0.78 -11.87 16 20 C -0.01 -0.29 6.34 -37.97 -0.24 -0.54 16 21 S 0.02 0.47 22.97 -107.50 -2.47 -2.00 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.13 2.82 6.19 -52.49 -0.32 2.50 16 30 H 0.30 5.57 8.29 -40.82 -0.34 5.23 16 LS Contribution 284.15 15.07 4.28 4.28 Total: -1.00 -25.20 284.15 -8.61 -33.80 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -2.81 Total: 1.51 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -3.97 Total: -21.39 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 1.38 Total: -27.25 kcal Atomic # 14 Polarization: 16.07 SS G_CDS: -5.03 Total: 11.04 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.47 Total: -2.00 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -25.20 -8.61 -33.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.437 kcal (2) G-P(sol) polarization free energy of solvation -25.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds