Wall clock time and date at job start Mon Mar 30 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50702 * 109.46901 * 2 1 4 4 C 1.32459 * 124.60414 * 89.72325 * 3 2 1 5 5 C 1.40627 * 115.93090 * 179.82876 * 4 3 2 6 6 C 1.42034 * 128.23104 * 180.18714 * 5 4 3 7 7 C 1.35008 * 121.98144 * 180.29518 * 6 5 4 8 8 C 1.41286 * 120.57248 * 359.97438 * 7 6 5 9 9 C 1.40325 * 120.61621 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99674 * 154.92939 * 9 8 7 11 11 C 1.40251 * 120.00190 * 334.92978 * 9 8 7 12 12 N 1.30664 * 119.99881 * 342.65872 * 11 9 8 13 13 Si 1.86803 * 120.00090 * 162.65608 * 11 9 8 14 14 H 1.48503 * 109.46978 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46991 * 119.99940 * 13 11 9 16 16 H 1.48500 * 109.47349 * 240.00040 * 13 11 9 17 17 C 1.46313 * 118.76241 * 359.97438 * 8 7 6 18 18 C 1.43207 * 120.46994 * 180.02562 * 17 8 7 19 19 N 6.83735 * 106.83960 * 328.94496 * 2 1 3 20 20 C 1.40062 * 112.25627 * 0.44569 * 5 4 3 21 21 S 1.75475 * 124.60684 * 270.02479 * 3 2 1 22 22 H 1.09000 * 109.47399 * 60.00221 * 1 2 3 23 23 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47151 * 299.99984 * 1 2 3 25 25 H 1.09000 * 109.47399 * 119.99779 * 2 1 3 26 26 H 1.08991 * 109.47381 * 240.00215 * 2 1 3 27 27 H 1.08003 * 122.03781 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.00883 * 0.27595 * 6 5 4 29 29 H 1.08001 * 119.71200 * 180.02562 * 7 6 5 30 30 H 0.97005 * 119.99896 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2780 2.1318 1.0903 5 6 2.7459 3.4409 0.8782 6 6 3.0914 4.4188 1.8486 7 6 3.5254 5.6491 1.5010 8 6 3.6521 6.0085 0.1405 9 6 4.1036 7.2868 -0.2219 10 1 4.5780 7.4404 -1.1799 11 6 3.9387 8.3649 0.6599 12 7 3.0869 8.2772 1.6469 13 14 4.9369 9.9261 0.4235 14 1 5.8229 9.7728 -0.7584 15 1 4.0184 11.0728 0.2076 16 1 5.7623 10.1738 1.6328 17 6 3.3049 5.0227 -0.8834 18 6 3.4202 5.3480 -2.2733 19 7 3.5107 5.6062 -3.3759 20 6 2.8551 3.7512 -0.4832 21 16 2.3638 2.3607 -1.4443 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5137 -0.8899 27 1 2.1311 1.7296 2.0818 28 1 3.0041 4.1709 2.8961 29 1 3.7786 6.3644 2.2695 30 1 2.9726 9.0230 2.2566 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212885.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:06 Heat of formation + Delta-G solvation = 29.418258 kcal Electronic energy + Delta-G solvation = -15548.292462 eV Core-core repulsion = 13012.174718 eV Total energy + Delta-G solvation = -2536.117745 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00379 -37.64784 -36.83581 -35.53086 -33.27382 -31.79625 -30.18671 -27.19108 -24.71156 -24.38640 -22.85837 -20.85214 -19.79937 -18.87866 -17.44013 -17.03645 -16.20352 -15.88304 -15.32742 -14.96941 -14.72742 -14.56264 -14.24871 -13.97169 -13.74538 -13.53168 -13.39332 -13.13115 -12.97625 -12.76984 -12.48526 -12.32524 -12.02855 -11.76988 -11.65424 -11.54057 -11.27179 -10.98882 -10.19065 -9.19343 -9.04335 -8.49114 -6.62706 0.16148 0.41190 0.84107 1.26631 1.33967 1.36521 1.51055 1.70267 1.99987 2.10195 2.43812 2.55588 3.48791 3.59421 3.98232 4.33131 4.39444 4.56354 4.67122 4.69364 4.83428 4.87285 4.99621 5.05836 5.10804 5.17480 5.28345 5.43442 5.47791 5.72785 5.83845 5.90389 5.98753 6.28355 6.46240 6.63838 6.92314 7.91202 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.005996 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.763180 B = 4668.474078 C = 5343.336108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.209 4.209 4 C -0.085 4.085 5 C -0.203 4.203 6 C -0.042 4.042 7 C -0.155 4.155 8 C 0.146 3.854 9 C -0.431 4.431 10 H 0.076 0.924 11 C 0.045 3.955 12 N -0.764 5.764 13 Si 0.985 3.015 14 H -0.267 1.267 15 H -0.259 1.259 16 H -0.244 1.244 17 C -0.219 4.219 18 C 0.299 3.701 19 N -0.530 5.530 20 C -0.042 4.042 21 S 0.007 5.993 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.055 0.945 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.158 0.842 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 -7.210 6.572 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C -0.324 4.324 4 C -0.113 4.113 5 C -0.210 4.210 6 C -0.063 4.063 7 C -0.175 4.175 8 C 0.138 3.862 9 C -0.457 4.457 10 H 0.094 0.906 11 C -0.179 4.179 12 N -0.385 5.385 13 Si 0.804 3.196 14 H -0.191 1.191 15 H -0.183 1.183 16 H -0.168 1.168 17 C -0.233 4.233 18 C -0.009 4.009 19 N -0.211 5.211 20 C -0.160 4.160 21 S 0.270 5.730 22 H 0.059 0.941 23 H 0.098 0.902 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.175 0.825 28 H 0.153 0.847 29 H 0.150 0.850 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.771 -7.077 3.580 8.126 hybrid contribution 0.404 1.177 1.370 1.850 sum -1.366 -5.900 4.950 7.822 Atomic orbital electron populations 1.21770 0.94204 1.02485 1.01682 1.20073 0.96252 0.88093 1.03601 1.23935 1.13238 1.01746 0.93469 1.19895 0.99780 0.91928 0.99734 1.18088 1.14854 0.96865 0.91176 1.20682 0.95463 0.91787 0.98349 1.20896 1.04975 0.96410 0.95216 1.18660 0.85712 0.90770 0.91028 1.20025 1.29653 0.93183 1.02849 0.90618 1.26904 0.94360 1.03952 0.92696 1.69684 1.23254 1.34596 1.10999 0.85081 0.78715 0.75400 0.80375 1.19056 1.18348 1.16767 1.16181 1.26520 0.96526 0.84030 1.25911 0.90986 0.91287 0.92677 1.80960 1.16298 1.10835 1.13030 1.22405 1.01282 0.95324 0.97004 1.83914 1.71509 1.05950 1.11668 0.94069 0.90245 0.92557 0.88404 0.91095 0.82504 0.84654 0.85022 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.89 71.98 0.71 -2.28 16 2 C -0.04 -0.95 6.39 29.85 0.19 -0.76 16 3 C -0.21 -6.73 5.68 24.56 0.14 -6.59 16 4 C -0.08 -2.83 9.96 21.73 0.22 -2.61 16 5 C -0.20 -8.26 5.88 -21.31 -0.13 -8.39 16 6 C -0.04 -1.67 9.91 22.47 0.22 -1.44 16 7 C -0.16 -6.90 8.58 22.28 0.19 -6.71 16 8 C 0.15 7.23 5.72 -19.92 -0.11 7.12 16 9 C -0.43 -21.07 8.55 23.27 0.20 -20.87 16 10 H 0.08 3.84 7.38 -2.91 -0.02 3.82 16 11 C 0.04 1.92 5.15 85.36 0.44 2.36 16 12 N -0.76 -32.62 10.97 21.88 0.24 -32.38 16 13 Si 0.99 32.84 29.60 68.60 2.03 34.87 16 14 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 15 H -0.26 -8.30 7.11 99.48 0.71 -7.60 16 16 H -0.24 -7.37 7.11 99.48 0.71 -6.67 16 17 C -0.22 -10.97 5.97 -19.33 -0.12 -11.08 16 18 C 0.30 15.47 14.04 88.33 1.24 16.71 16 19 N -0.53 -27.74 18.54 19.01 0.35 -27.39 16 20 C -0.04 -1.92 6.34 23.31 0.15 -1.78 16 21 S 0.01 0.29 22.97 -56.49 -1.30 -1.00 16 22 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 28 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.13 5.71 6.19 -2.91 -0.02 5.69 16 30 H 0.31 11.37 8.29 -92.70 -0.77 10.60 16 Total: -1.00 -55.85 284.15 5.84 -50.01 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.17 Total: 12.23 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.34 Total: -36.33 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.59 Total: -59.77 kcal Atomic # 14 Polarization: 32.84 SS G_CDS: 2.03 Total: 34.87 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.30 Total: -1.00 kcal Total: -55.85 5.84 -50.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212885.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.426 kcal (2) G-P(sol) polarization free energy of solvation -55.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds