Wall clock time and date at job start Mon Mar 30 2020 06:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47115 * 2 1 4 4 C 1.36975 * 119.70921 * 265.27424 * 3 2 1 5 5 C 1.41601 * 121.88872 * 180.33054 * 4 3 2 6 6 C 1.45433 * 128.61685 * 179.67806 * 5 4 3 7 7 C 1.31940 * 114.96983 * 179.97438 * 6 5 4 8 8 S 1.75298 * 111.30858 * 0.02562 * 7 6 5 9 9 C 1.39450 * 119.65286 * 359.65944 * 5 4 3 10 10 C 1.42205 * 119.87950 * 0.03644 * 9 5 4 11 11 C 1.40269 * 120.45008 * 180.02562 * 10 9 5 12 12 H 1.08006 * 120.00092 * 218.66337 * 11 10 9 13 13 C 1.40298 * 120.00183 * 38.65833 * 11 10 9 14 14 N 1.30650 * 119.99841 * 20.96636 * 13 11 10 15 15 Si 1.86801 * 120.00192 * 200.95590 * 13 11 10 16 16 H 1.48499 * 109.47130 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46924 * 120.00203 * 15 13 11 18 18 H 1.48493 * 109.47410 * 240.00384 * 15 13 11 19 19 C 1.39783 * 119.70305 * 84.99823 * 3 2 1 20 20 C 1.43198 * 120.55356 * 0.02562 * 19 3 2 21 21 N 3.56613 * 90.41083 * 74.16984 * 2 1 3 22 22 H 1.08994 * 109.47490 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47066 * 300.00387 * 1 2 3 24 24 H 1.09004 * 109.46938 * 59.99779 * 1 2 3 25 25 H 1.08996 * 109.46671 * 239.99863 * 2 1 3 26 26 H 1.08999 * 109.46557 * 119.99996 * 2 1 3 27 27 H 1.07997 * 119.05030 * 359.97438 * 4 3 2 28 28 H 1.08001 * 122.51435 * 359.96328 * 6 5 4 29 29 H 1.08000 * 124.34971 * 180.02562 * 7 6 5 30 30 H 0.96998 * 119.99821 * 181.88816 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3511 2.0282 -1.1857 5 6 2.8334 3.3584 -1.2388 6 6 3.2192 4.1382 -2.4042 7 6 3.6344 5.3628 -2.1424 8 16 3.5972 5.6938 -0.4213 9 6 2.9865 4.0845 -0.0581 10 6 2.6586 3.4856 1.1894 11 6 2.8075 4.2051 2.3843 12 1 3.1721 3.7089 3.2716 13 6 2.4828 5.5693 2.4268 14 7 1.6810 6.0782 1.5295 15 14 3.1966 6.6580 3.7664 16 1 4.0692 5.8458 4.6518 17 1 3.9958 7.7456 3.1469 18 1 2.0927 7.2483 4.5652 19 6 2.1635 2.1091 1.2095 20 6 1.8250 1.4753 2.4482 21 7 1.5556 0.9728 3.4308 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.2365 1.4746 -2.1059 28 1 3.1696 3.7443 -3.4086 29 1 3.9561 6.0706 -2.8921 30 1 1.4782 7.0267 1.5425 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396212905.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:46 Heat of formation + Delta-G solvation = 33.003375 kcal Electronic energy + Delta-G solvation = -16125.595074 eV Core-core repulsion = 13589.632791 eV Total energy + Delta-G solvation = -2535.962282 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99432 -37.42162 -36.29527 -35.98122 -33.40323 -31.16087 -29.65698 -27.56241 -25.13138 -23.93379 -22.61687 -20.88535 -19.46672 -18.92677 -17.30106 -17.12893 -16.44410 -15.66534 -15.02068 -14.79146 -14.58146 -14.50945 -14.37622 -13.81591 -13.69205 -13.48650 -13.37712 -13.12890 -13.01792 -12.93317 -12.63780 -12.24818 -11.99308 -11.78711 -11.59129 -11.46318 -11.16073 -10.70717 -10.00943 -9.06047 -8.95590 -8.04740 -6.62115 -0.06678 0.86371 1.15452 1.28428 1.33209 1.44986 1.54970 1.71870 2.11144 2.11811 2.45430 2.61383 3.42884 3.63916 3.93422 4.19309 4.33424 4.56996 4.58046 4.72499 4.81942 4.87618 4.99912 5.05393 5.17295 5.23610 5.34270 5.38095 5.45569 5.60120 5.78200 6.00850 6.13402 6.29625 6.53505 6.66809 6.99224 8.04533 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.010868 C = 0.007069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.827928 B = 2575.652464 C = 3959.878870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C 0.004 3.996 4 C -0.200 4.200 5 C -0.039 4.039 6 C -0.140 4.140 7 C -0.210 4.210 8 S 0.087 5.913 9 C -0.204 4.204 10 C 0.174 3.826 11 C -0.481 4.481 12 H 0.072 0.928 13 C 0.048 3.952 14 N -0.763 5.763 15 Si 0.955 3.045 16 H -0.264 1.264 17 H -0.245 1.245 18 H -0.263 1.263 19 C -0.203 4.203 20 C 0.312 3.688 21 N -0.529 5.529 22 H 0.076 0.924 23 H 0.025 0.975 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.137 0.863 28 H 0.163 0.837 29 H 0.188 0.812 30 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 0.578 -8.764 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.119 4.119 3 C 0.000 4.000 4 C -0.221 4.221 5 C -0.049 4.049 6 C -0.171 4.171 7 C -0.344 4.344 8 S 0.353 5.647 9 C -0.320 4.320 10 C 0.166 3.834 11 C -0.509 4.509 12 H 0.090 0.910 13 C -0.175 4.175 14 N -0.386 5.386 15 Si 0.775 3.225 16 H -0.188 1.188 17 H -0.169 1.169 18 H -0.187 1.187 19 C -0.212 4.212 20 C 0.003 3.997 21 N -0.209 5.209 22 H 0.095 0.905 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.070 0.930 27 H 0.155 0.845 28 H 0.181 0.819 29 H 0.205 0.795 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.062 1.346 -6.499 6.950 hybrid contribution -0.157 -0.388 -0.183 0.457 sum 1.906 0.958 -6.682 7.014 Atomic orbital electron populations 1.21665 0.94318 1.02180 1.01333 1.20586 0.96646 0.91800 1.02853 1.19370 0.94468 0.95283 0.90848 1.20153 1.11278 0.93747 0.96923 1.19684 0.98405 0.95191 0.91578 1.21133 1.03414 0.93892 0.98707 1.25691 1.06875 1.01062 1.00816 1.83741 1.66934 1.14293 0.99763 1.22699 1.14057 0.98533 0.96725 1.17923 0.85336 0.88998 0.91170 1.19607 1.38974 0.95189 0.97120 0.90988 1.26516 0.93045 0.98693 0.99260 1.69700 1.20934 1.16533 1.31452 0.85515 0.79683 0.78625 0.78695 1.18810 1.16868 1.18722 1.16891 1.20957 0.96786 0.86541 1.25729 0.90859 0.90761 0.92306 1.80980 1.15666 1.12752 1.11508 0.90522 0.95570 0.91558 0.88157 0.93009 0.84485 0.81942 0.79520 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.90 71.98 0.71 -3.40 16 2 C -0.08 -2.62 5.56 29.85 0.17 -2.45 16 3 C 0.00 0.18 5.14 -19.79 -0.10 0.08 16 4 C -0.20 -7.50 9.62 22.80 0.22 -7.29 16 5 C -0.04 -1.59 6.03 -20.30 -0.12 -1.71 16 6 C -0.14 -4.63 10.38 23.26 0.24 -4.39 16 7 C -0.21 -6.77 11.03 66.95 0.74 -6.03 16 8 S 0.09 3.53 19.85 -56.49 -1.12 2.41 16 9 C -0.20 -9.49 5.75 23.55 0.14 -9.36 16 10 C 0.17 8.81 5.54 -19.70 -0.11 8.70 16 11 C -0.48 -24.87 8.23 23.27 0.19 -24.68 16 12 H 0.07 3.85 7.73 -2.91 -0.02 3.83 16 13 C 0.05 2.24 4.27 85.37 0.36 2.60 16 14 N -0.76 -36.06 10.67 21.89 0.23 -35.83 16 15 Si 0.95 36.44 29.61 68.60 2.03 38.47 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 19 C -0.20 -9.64 5.95 -19.56 -0.12 -9.76 16 20 C 0.31 15.25 12.83 88.33 1.13 16.38 16 21 N -0.53 -26.32 18.54 19.00 0.35 -25.96 16 22 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.03 0.91 7.93 -2.39 -0.02 0.89 16 24 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.10 2.55 8.02 -2.39 -0.02 2.53 16 26 H 0.05 1.77 7.27 -2.39 -0.02 1.75 16 27 H 0.14 4.11 8.03 -2.91 -0.02 4.09 16 28 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 29 H 0.19 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.30 12.79 8.29 -92.71 -0.77 12.03 16 Total: -1.00 -57.60 279.88 6.11 -51.49 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.16 Total: 10.72 kcal Atomic # 6 Polarization: -44.75 SS G_CDS: 3.45 Total: -41.30 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.59 Total: -61.79 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.12 Total: 2.41 kcal Total: -57.60 6.11 -51.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396212905.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.494 kcal (2) G-P(sol) polarization free energy of solvation -57.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds