Wall clock time and date at job start Mon Mar 30 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 S 1.75236 * 124.63409 * 69.79480 * 3 2 1 5 5 C 1.75912 * 92.60185 * 179.97438 * 4 3 2 6 6 C 1.40084 * 129.85149 * 180.02562 * 5 4 3 7 7 C 1.37946 * 121.57690 * 180.02562 * 6 5 4 8 8 C 1.37689 * 121.14681 * 359.96166 * 7 6 5 9 9 C 1.40343 * 119.97182 * 0.02562 * 8 7 6 10 10 C 1.40596 * 120.39648 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00123 * 139.03951 * 10 9 8 12 12 C 1.40138 * 119.99713 * 319.04308 * 10 9 8 13 13 N 1.30740 * 119.99945 * 353.30694 * 12 10 9 14 14 Si 1.86804 * 119.99730 * 173.31000 * 12 10 9 15 15 H 1.48497 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47058 * 119.99958 * 14 12 10 17 17 H 1.48502 * 109.46789 * 239.99879 * 14 12 10 18 18 C 1.39397 * 110.45442 * 359.97438 * 5 4 3 19 19 C 1.37482 * 124.63369 * 250.08279 * 3 2 1 20 20 C 1.46360 * 123.12874 * 0.05427 * 19 3 2 21 21 O 1.21352 * 120.00181 * 354.18374 * 20 19 3 22 22 H 1.07996 * 119.21440 * 359.97438 * 6 5 4 23 23 H 1.08001 * 119.42940 * 179.97438 * 7 6 5 24 24 H 1.08007 * 120.01358 * 180.02562 * 8 7 6 25 25 H 0.97008 * 119.99738 * 180.02562 * 13 12 10 26 26 H 1.07998 * 119.99945 * 174.17932 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 16 3.5641 -0.4969 -1.3531 5 6 5.0552 -0.1732 -0.4778 6 6 6.3867 -0.3223 -0.8868 7 6 7.4385 -0.0136 -0.0494 8 6 7.2191 0.4557 1.2263 9 6 5.9072 0.6268 1.6944 10 6 5.6729 1.1059 2.9953 11 1 4.8858 1.8239 3.1727 12 6 6.4607 0.6520 4.0617 13 7 7.3243 -0.3112 3.8726 14 14 6.2767 1.4230 5.7532 15 1 5.2400 2.4850 5.7030 16 1 5.8718 0.3811 6.7307 17 1 7.5726 2.0162 6.1703 18 6 4.7753 0.2991 0.8035 19 6 3.3491 0.3863 1.0635 20 6 2.7950 0.8465 2.3376 21 8 1.5975 1.0017 2.4578 22 1 6.5947 -0.6884 -1.8813 23 1 8.4517 -0.1421 -0.4005 24 1 8.0563 0.6921 1.8664 25 1 7.8694 -0.6257 4.6109 26 1 3.4519 1.0479 3.1709 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213016.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:22 Heat of formation + Delta-G solvation = 19.623989 kcal Electronic energy + Delta-G solvation = -15598.919640 eV Core-core repulsion = 12926.544089 eV Total energy + Delta-G solvation = -2672.375551 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64853 -39.22293 -37.74928 -35.96289 -35.19401 -31.79509 -30.46529 -27.34954 -27.28845 -23.69773 -22.90813 -21.21448 -20.28626 -18.69618 -17.50090 -17.35285 -16.91872 -16.17506 -15.81479 -15.65742 -15.17549 -14.78445 -14.70242 -14.50903 -13.96877 -13.94469 -13.65867 -13.24072 -13.13051 -12.88288 -12.50148 -12.13594 -11.78565 -11.57423 -11.36543 -11.15773 -10.75556 -10.04315 -9.23998 -8.75794 -8.55934 -6.42343 -0.95540 0.26635 0.68233 0.85764 0.94734 1.48506 1.51914 1.60098 1.61577 1.78242 2.20286 2.30768 2.67260 2.87036 3.43098 3.54247 4.14334 4.22875 4.43110 4.69148 4.84077 4.98860 5.02796 5.17647 5.31376 5.63305 5.88047 6.00576 6.08001 6.30844 6.34284 6.50832 6.70212 6.78674 8.22907 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.009102 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.994646 B = 3075.550328 C = 4392.670283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.303 3.697 3 C -0.159 4.159 4 S 0.180 5.820 5 C -0.101 4.101 6 C -0.208 4.208 7 C -0.053 4.053 8 C -0.188 4.188 9 C 0.142 3.858 10 C -0.469 4.469 11 H 0.101 0.899 12 C 0.046 3.954 13 N -0.802 5.802 14 Si 0.971 3.029 15 H -0.251 1.251 16 H -0.270 1.270 17 H -0.264 1.264 18 C -0.168 4.168 19 C -0.078 4.078 20 C 0.387 3.613 21 O -0.494 6.494 22 H 0.129 0.871 23 H 0.133 0.867 24 H 0.109 0.891 25 H 0.296 0.704 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 0.509 -2.586 4.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.011 4.011 3 C -0.279 4.279 4 S 0.448 5.552 5 C -0.217 4.217 6 C -0.234 4.234 7 C -0.074 4.074 8 C -0.210 4.210 9 C 0.137 3.863 10 C -0.497 4.497 11 H 0.119 0.881 12 C -0.173 4.173 13 N -0.426 5.426 14 Si 0.792 3.208 15 H -0.175 1.175 16 H -0.195 1.195 17 H -0.188 1.188 18 C -0.173 4.173 19 C -0.098 4.098 20 C 0.247 3.753 21 O -0.370 6.370 22 H 0.147 0.853 23 H 0.151 0.849 24 H 0.127 0.873 25 H 0.107 0.893 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.243 -0.118 -3.911 4.106 hybrid contribution 0.887 0.552 2.113 2.357 sum 2.130 0.433 -1.798 2.821 Atomic orbital electron populations 1.81100 1.11823 1.10633 1.08661 1.24331 0.91134 0.92804 0.92836 1.19926 0.88359 1.17928 1.01686 1.83186 0.92480 1.68012 1.11536 1.22685 0.98051 1.04058 0.96877 1.20046 0.88575 1.13429 1.01372 1.20904 0.98484 0.94679 0.93317 1.21066 0.96044 1.08229 0.95640 1.18644 0.89481 0.87105 0.91094 1.19980 1.15584 1.22232 0.91892 0.88112 1.26638 0.92510 0.93587 1.04586 1.69736 1.16760 1.19928 1.36161 0.85275 0.79927 0.79347 0.76287 1.17451 1.19483 1.18845 1.20034 0.90465 1.10606 0.96146 1.21171 0.92816 1.00524 0.95292 1.24819 0.89403 0.70158 0.90885 1.90495 1.20467 1.40661 1.85386 0.85327 0.84897 0.87274 0.89281 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -18.52 18.54 19.00 0.35 -18.17 15 2 C 0.30 12.12 13.81 88.33 1.22 13.34 15 3 C -0.16 -6.07 6.28 23.34 0.15 -5.92 15 4 S 0.18 5.84 23.14 -56.49 -1.31 4.53 15 5 C -0.10 -3.77 6.44 23.00 0.15 -3.62 15 6 C -0.21 -7.19 10.02 22.65 0.23 -6.96 15 7 C -0.05 -1.86 9.95 22.07 0.22 -1.64 15 8 C -0.19 -7.74 8.60 22.65 0.19 -7.55 15 9 C 0.14 6.12 5.57 -19.68 -0.11 6.01 15 10 C -0.47 -19.59 7.35 23.31 0.17 -19.42 15 11 H 0.10 3.93 5.79 -2.91 -0.02 3.91 15 12 C 0.05 1.85 5.27 85.32 0.45 2.30 15 13 N -0.80 -34.12 11.52 21.86 0.25 -33.87 15 14 Si 0.97 31.13 29.57 68.60 2.03 33.16 15 15 H -0.25 -7.86 7.11 99.48 0.71 -7.16 15 16 H -0.27 -8.67 7.11 99.48 0.71 -7.96 15 17 H -0.26 -8.26 7.11 99.48 0.71 -7.56 15 18 C -0.17 -6.91 6.17 -18.69 -0.12 -7.02 15 19 C -0.08 -3.13 6.01 -19.55 -0.12 -3.25 15 20 C 0.39 15.20 10.85 69.93 0.76 15.96 15 21 O -0.49 -21.42 15.94 -3.25 -0.05 -21.47 15 22 H 0.13 3.67 8.06 -2.91 -0.02 3.64 15 23 H 0.13 3.83 8.06 -2.91 -0.02 3.81 15 24 H 0.11 4.64 7.04 -2.91 -0.02 4.62 15 25 H 0.30 11.40 8.29 -92.70 -0.77 10.63 15 26 H 0.15 5.39 4.77 -2.91 -0.01 5.37 15 Total: -1.00 -50.01 258.35 5.72 -44.29 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.25 Total: 9.31 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 3.19 Total: -17.78 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.60 Total: -52.04 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 31.13 SS G_CDS: 2.03 Total: 33.16 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.31 Total: 4.53 kcal Total: -50.01 5.72 -44.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213016.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.911 kcal (2) G-P(sol) polarization free energy of solvation -50.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds