Wall clock time and date at job start Mon Mar 30 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47233 * 2 1 4 4 C 1.31783 * 122.55375 * 264.97653 * 3 2 1 5 5 S 1.75289 * 111.39321 * 180.02562 * 4 3 2 6 6 C 1.75950 * 92.19774 * 359.97438 * 5 4 3 7 7 C 1.39602 * 109.71361 * 359.97438 * 6 5 4 8 8 C 1.40995 * 119.16703 * 179.97438 * 7 6 5 9 9 C 1.39217 * 120.79247 * 0.26212 * 8 7 6 10 10 C 1.43196 * 119.79664 * 179.72071 * 9 8 7 11 11 N 6.33273 * 91.09606 * 71.84097 * 2 1 3 12 12 C 1.39378 * 120.40263 * 359.44099 * 9 8 7 13 13 C 1.40055 * 119.73068 * 0.56928 * 12 9 8 14 14 C 1.41001 * 120.00543 * 179.72721 * 13 12 9 15 15 H 1.07992 * 120.00064 * 154.33968 * 14 13 12 16 16 C 1.39903 * 119.99872 * 334.33827 * 14 13 12 17 17 N 1.30878 * 120.00334 * 342.54928 * 16 14 13 18 18 Si 1.86803 * 120.00010 * 162.54545 * 16 14 13 19 19 H 1.48498 * 109.46762 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47153 * 119.99816 * 18 16 14 21 21 H 1.48500 * 109.47165 * 240.00132 * 18 16 14 22 22 H 1.08995 * 109.46812 * 60.00232 * 1 2 3 23 23 H 1.08999 * 109.46639 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.46998 * 300.00096 * 1 2 3 25 25 H 1.09003 * 109.47271 * 239.99812 * 2 1 3 26 26 H 1.09002 * 109.47135 * 120.00004 * 2 1 3 27 27 H 1.08003 * 124.30459 * 0.04080 * 4 3 2 28 28 H 1.08004 * 119.60506 * 179.97438 * 8 7 6 29 29 H 1.07993 * 120.13106 * 180.27272 * 12 9 8 30 30 H 0.96998 * 120.00564 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0569 -1.1065 5 16 2.9065 3.6880 -0.7685 6 6 2.6711 3.4804 0.9628 7 6 2.1913 2.1954 1.2221 8 6 1.9323 1.8145 2.5547 9 6 2.1445 2.7041 3.6043 10 6 1.8687 2.2968 4.9491 11 7 1.6512 1.9733 6.0162 12 6 2.6292 3.9868 3.3546 13 6 2.8927 4.3858 2.0382 14 6 3.3777 5.6840 1.7785 15 1 3.9593 5.8752 0.8889 16 6 3.1054 6.7244 2.6733 17 7 2.1422 6.5981 3.5504 18 14 4.1167 8.2940 2.6164 19 1 5.1365 8.1870 1.5422 20 1 3.2244 9.4479 2.3379 21 1 4.7927 8.4950 3.9232 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3004 1.6280 -2.0959 28 1 1.5605 0.8221 2.7634 29 1 2.7964 4.6719 4.1726 30 1 1.9532 7.3196 4.1705 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396213525.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:58 Heat of formation + Delta-G solvation = 43.241394 kcal Electronic energy + Delta-G solvation = -15755.543364 eV Core-core repulsion = 13220.025035 eV Total energy + Delta-G solvation = -2535.518329 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.59564 -36.29591 -35.40365 -33.58608 -31.48276 -30.22211 -28.32254 -25.69560 -23.86066 -22.39097 -21.78176 -19.47267 -17.48427 -16.61756 -16.47728 -15.24318 -14.75945 -14.49070 -13.79390 -13.53384 -13.27308 -13.14950 -12.73425 -12.64150 -12.12385 -11.95393 -11.77807 -11.69856 -11.45974 -11.33561 -10.92789 -10.80659 -10.65039 -10.46325 -10.05535 -9.93950 -9.61995 -9.42699 -8.37582 -7.52827 -7.09896 -6.85783 -4.63088 1.77133 1.89672 2.54096 2.80625 2.96020 3.01253 3.06564 3.26828 3.43412 3.73692 3.78529 4.46481 4.82120 5.22186 5.28054 5.35270 5.55430 5.66528 5.92587 6.04373 6.13798 6.17435 6.34740 6.47563 6.53938 6.72380 6.84528 6.94018 7.04849 7.27473 7.45892 7.54630 7.76622 8.11949 8.28840 8.46614 8.48853 9.86456 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.008419 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.699686 B = 3324.838306 C = 4696.537216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.062 4.062 3 C -0.086 4.086 4 C -0.214 4.214 5 S 0.051 5.949 6 C -0.190 4.190 7 C -0.040 4.040 8 C -0.169 4.169 9 C -0.006 4.006 10 C 0.283 3.717 11 N -0.470 5.470 12 C -0.123 4.123 13 C 0.143 3.857 14 C -0.445 4.445 15 H 0.087 0.913 16 C 0.076 3.924 17 N -0.777 5.777 18 Si 0.912 3.088 19 H -0.256 1.256 20 H -0.271 1.271 21 H -0.268 1.268 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -4.209 -6.984 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.099 4.099 4 C -0.348 4.348 5 S 0.316 5.684 6 C -0.305 4.305 7 C -0.047 4.047 8 C -0.193 4.193 9 C -0.011 4.011 10 C -0.030 4.030 11 N -0.147 5.147 12 C -0.149 4.149 13 C 0.137 3.863 14 C -0.473 4.473 15 H 0.105 0.895 16 C -0.145 4.145 17 N -0.401 5.401 18 Si 0.736 3.264 19 H -0.180 1.180 20 H -0.196 1.196 21 H -0.193 1.193 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.121 0.879 29 H 0.151 0.849 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.421 -3.377 -6.143 7.023 hybrid contribution -0.116 -0.208 0.462 0.520 sum 0.305 -3.584 -5.681 6.724 Atomic orbital electron populations 1.21723 0.95174 1.00910 1.02446 1.20207 0.95749 0.92237 1.02036 1.19640 1.02128 0.96533 0.91642 1.24692 1.09580 0.99390 1.01116 1.83639 1.71445 1.11359 1.01943 1.22759 1.13572 0.98820 0.95395 1.18541 1.01496 0.92359 0.92337 1.19949 1.11389 0.98394 0.89577 1.15709 1.05520 0.95795 0.84085 1.26213 0.92043 0.91735 0.93054 1.81075 1.11258 1.10262 1.12090 1.21176 1.03867 0.92747 0.97085 1.16783 0.89522 0.91471 0.88522 1.19587 1.28522 0.92210 1.06956 0.89499 1.25971 0.93760 1.01106 0.93637 1.69799 1.21864 1.33835 1.14575 0.86165 0.80497 0.80014 0.79745 1.17979 1.19609 1.19331 0.92866 0.93019 0.92161 0.91767 0.91151 0.83253 0.87871 0.84950 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.90 37.16 0.37 -1.48 16 2 C -0.06 -0.86 6.04 -27.88 -0.17 -1.03 16 3 C -0.09 -1.49 5.23 -103.60 -0.54 -2.03 16 4 C -0.21 -3.57 10.74 28.84 0.31 -3.26 16 5 S 0.05 0.98 22.81 -107.50 -2.45 -1.48 16 6 C -0.19 -4.23 6.37 -37.51 -0.24 -4.47 16 7 C -0.04 -0.83 6.00 -105.43 -0.63 -1.46 16 8 C -0.17 -3.43 9.49 -38.17 -0.36 -3.79 16 9 C -0.01 -0.14 5.71 -107.18 -0.61 -0.75 16 10 C 0.28 6.03 15.29 -22.47 -0.34 5.69 16 11 N -0.47 -10.24 18.54 41.84 0.78 -9.46 16 12 C -0.12 -2.88 8.35 -38.48 -0.32 -3.21 16 13 C 0.14 3.43 5.58 -106.60 -0.60 2.83 16 14 C -0.44 -10.59 8.81 -37.91 -0.33 -10.92 16 15 H 0.09 2.02 7.74 -52.49 -0.41 1.61 16 16 C 0.08 1.72 5.12 -17.34 -0.09 1.64 16 17 N -0.78 -18.31 10.99 55.55 0.61 -17.70 16 18 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 19 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.07 0.96 7.80 -51.93 -0.40 0.55 16 27 H 0.15 2.02 8.06 -52.48 -0.42 1.60 16 28 H 0.10 1.87 7.76 -52.48 -0.41 1.47 16 29 H 0.13 3.23 6.19 -52.49 -0.32 2.90 16 30 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 LS Contribution 284.24 15.07 4.28 4.28 Total: -1.00 -24.86 284.24 -8.16 -33.02 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.79 Total: 1.48 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -3.56 Total: -22.23 kcal Atomic # 7 Polarization: -28.55 SS G_CDS: 1.39 Total: -27.16 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.45 Total: -1.48 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -24.86 -8.16 -33.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213525.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.262 kcal (2) G-P(sol) polarization free energy of solvation -24.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds