Wall clock time and date at job start Mon Mar 30 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47233 * 2 1 4 4 C 1.31783 * 122.55375 * 264.97653 * 3 2 1 5 5 S 1.75289 * 111.39321 * 180.02562 * 4 3 2 6 6 C 1.75950 * 92.19774 * 359.97438 * 5 4 3 7 7 C 1.39602 * 109.71361 * 359.97438 * 6 5 4 8 8 C 1.40995 * 119.16703 * 179.97438 * 7 6 5 9 9 C 1.39217 * 120.79247 * 0.26212 * 8 7 6 10 10 C 1.43196 * 119.79664 * 179.72071 * 9 8 7 11 11 N 6.33273 * 91.09606 * 71.84097 * 2 1 3 12 12 C 1.39378 * 120.40263 * 359.44099 * 9 8 7 13 13 C 1.40055 * 119.73068 * 0.56928 * 12 9 8 14 14 C 1.41001 * 120.00543 * 179.72721 * 13 12 9 15 15 H 1.07992 * 120.00064 * 154.33968 * 14 13 12 16 16 C 1.39903 * 119.99872 * 334.33827 * 14 13 12 17 17 N 1.30878 * 120.00334 * 342.54928 * 16 14 13 18 18 Si 1.86803 * 120.00010 * 162.54545 * 16 14 13 19 19 H 1.48498 * 109.46762 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47153 * 119.99816 * 18 16 14 21 21 H 1.48500 * 109.47165 * 240.00132 * 18 16 14 22 22 H 1.08995 * 109.46812 * 60.00232 * 1 2 3 23 23 H 1.08999 * 109.46639 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.46998 * 300.00096 * 1 2 3 25 25 H 1.09003 * 109.47271 * 239.99812 * 2 1 3 26 26 H 1.09002 * 109.47135 * 120.00004 * 2 1 3 27 27 H 1.08003 * 124.30459 * 0.04080 * 4 3 2 28 28 H 1.08004 * 119.60506 * 179.97438 * 8 7 6 29 29 H 1.07993 * 120.13106 * 180.27272 * 12 9 8 30 30 H 0.96998 * 120.00564 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3605 2.0569 -1.1065 5 16 2.9065 3.6880 -0.7685 6 6 2.6711 3.4804 0.9628 7 6 2.1913 2.1954 1.2221 8 6 1.9323 1.8145 2.5547 9 6 2.1445 2.7041 3.6043 10 6 1.8687 2.2968 4.9491 11 7 1.6512 1.9733 6.0162 12 6 2.6292 3.9868 3.3546 13 6 2.8927 4.3858 2.0382 14 6 3.3777 5.6840 1.7785 15 1 3.9593 5.8752 0.8889 16 6 3.1054 6.7244 2.6733 17 7 2.1422 6.5981 3.5504 18 14 4.1167 8.2940 2.6164 19 1 5.1365 8.1870 1.5422 20 1 3.2244 9.4479 2.3379 21 1 4.7927 8.4950 3.9232 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3004 1.6280 -2.0959 28 1 1.5605 0.8221 2.7634 29 1 2.7964 4.6719 4.1726 30 1 1.9532 7.3196 4.1705 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213525.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:58 Heat of formation + Delta-G solvation = 33.383616 kcal Electronic energy + Delta-G solvation = -15755.970829 eV Core-core repulsion = 13220.025035 eV Total energy + Delta-G solvation = -2535.945794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19662 -37.87632 -37.03656 -35.21487 -32.82969 -31.85339 -29.84618 -27.39588 -25.19657 -23.88534 -23.38472 -20.99211 -19.00731 -18.31697 -18.07757 -16.81832 -16.31847 -15.99194 -15.13541 -14.92152 -14.87917 -14.72538 -14.18679 -14.17893 -13.73746 -13.47458 -13.26528 -13.22616 -12.85115 -12.72567 -12.51595 -12.29586 -12.09474 -11.70146 -11.55885 -11.45752 -11.16462 -11.10181 -10.00991 -9.16184 -8.78157 -8.43646 -6.40077 0.12997 0.29455 1.05491 1.28559 1.40618 1.52846 1.54932 1.69634 1.73003 2.10364 2.17941 2.75438 3.10804 3.50935 3.98337 4.19452 4.41204 4.50329 4.63816 4.70699 4.84850 4.91320 5.06873 5.13230 5.16297 5.22798 5.35885 5.44883 5.54265 5.71440 5.74801 5.88364 6.07816 6.35214 6.55236 6.73733 6.74536 8.20298 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.008419 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.699686 B = 3324.838306 C = 4696.537216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.060 4.060 3 C -0.093 4.093 4 C -0.198 4.198 5 S 0.046 5.954 6 C -0.215 4.215 7 C -0.050 4.050 8 C -0.156 4.156 9 C -0.011 4.011 10 C 0.292 3.708 11 N -0.478 5.478 12 C -0.147 4.147 13 C 0.119 3.881 14 C -0.474 4.474 15 H 0.083 0.917 16 C 0.041 3.959 17 N -0.811 5.811 18 Si 0.978 3.022 19 H -0.255 1.255 20 H -0.265 1.265 21 H -0.265 1.265 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.191 0.809 28 H 0.129 0.871 29 H 0.115 0.885 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -5.672 -8.647 10.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.106 4.106 4 C -0.332 4.332 5 S 0.311 5.689 6 C -0.331 4.331 7 C -0.058 4.058 8 C -0.180 4.180 9 C -0.016 4.016 10 C -0.021 4.021 11 N -0.154 5.154 12 C -0.173 4.173 13 C 0.114 3.886 14 C -0.502 4.502 15 H 0.102 0.898 16 C -0.177 4.177 17 N -0.436 5.436 18 Si 0.798 3.202 19 H -0.178 1.178 20 H -0.190 1.190 21 H -0.189 1.189 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.208 0.792 28 H 0.146 0.854 29 H 0.132 0.868 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.301 -4.859 -7.809 9.203 hybrid contribution -0.127 0.106 0.889 0.904 sum 0.174 -4.753 -6.920 8.397 Atomic orbital electron populations 1.21713 0.94433 1.02325 1.01581 1.20306 0.96240 0.89758 1.03620 1.19916 1.02287 0.98271 0.90157 1.25108 1.07822 0.97418 1.02802 1.83604 1.71702 1.13885 0.99750 1.23123 1.13606 0.99433 0.96963 1.19024 1.00743 0.92361 0.93694 1.20264 1.09516 0.98971 0.89281 1.15753 1.05691 0.95538 0.84645 1.26111 0.91744 0.91423 0.92868 1.81071 1.11624 1.10678 1.12066 1.21031 1.06081 0.93444 0.96767 1.17049 0.90099 0.92214 0.89258 1.19741 1.29822 0.92952 1.07728 0.89847 1.26717 0.94246 1.03751 0.92943 1.69848 1.23155 1.35062 1.15497 0.85195 0.78949 0.76310 0.79699 1.17787 1.18983 1.18915 0.92603 0.90500 0.94191 0.88891 0.90917 0.79232 0.85350 0.86751 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.90 71.98 0.71 -2.42 16 2 C -0.06 -1.40 6.04 29.85 0.18 -1.22 16 3 C -0.09 -2.98 5.23 -18.73 -0.10 -3.08 16 4 C -0.20 -5.96 10.74 67.07 0.72 -5.24 16 5 S 0.05 1.71 22.81 -56.49 -1.29 0.42 16 6 C -0.22 -9.66 6.37 23.61 0.15 -9.51 16 7 C -0.05 -2.02 6.00 -20.39 -0.12 -2.15 16 8 C -0.16 -6.21 9.49 23.18 0.22 -5.99 16 9 C -0.01 -0.49 5.71 -21.52 -0.12 -0.62 16 10 C 0.29 12.47 15.29 88.33 1.35 13.83 16 11 N -0.48 -20.69 18.54 19.00 0.35 -20.33 16 12 C -0.15 -7.20 8.35 22.99 0.19 -7.01 16 13 C 0.12 5.93 5.58 -21.15 -0.12 5.81 16 14 C -0.47 -23.41 8.81 23.35 0.21 -23.21 16 15 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 16 C 0.04 1.91 5.12 85.24 0.44 2.34 16 17 N -0.81 -39.70 10.99 21.82 0.24 -39.46 16 18 Si 0.98 35.74 29.59 68.60 2.03 37.77 16 19 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 26 H 0.07 1.70 7.80 -2.39 -0.02 1.68 16 27 H 0.19 4.15 8.06 -2.91 -0.02 4.12 16 28 H 0.13 4.39 7.76 -2.91 -0.02 4.37 16 29 H 0.11 5.91 6.19 -2.91 -0.02 5.90 16 30 H 0.29 13.00 8.30 -92.71 -0.77 12.23 16 Total: -1.00 -54.58 284.24 6.21 -48.37 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.17 Total: 11.70 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 3.71 Total: -38.47 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 0.59 Total: -59.79 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.29 Total: 0.42 kcal Total: -54.58 6.21 -48.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213525.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.752 kcal (2) G-P(sol) polarization free energy of solvation -54.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds