Wall clock time and date at job start Mon Mar 30 2020 06:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47202 * 2 1 4 4 C 1.40499 * 119.76080 * 89.99820 * 3 2 1 5 5 C 1.45651 * 129.04998 * 359.97438 * 4 3 2 6 6 C 1.31652 * 114.90409 * 180.24650 * 5 4 3 7 7 S 1.75263 * 111.50191 * 359.62652 * 6 5 4 8 8 C 1.40020 * 119.21054 * 179.97438 * 4 3 2 9 9 C 1.41754 * 120.09960 * 359.97438 * 8 4 3 10 10 C 1.43200 * 119.83534 * 180.02562 * 9 8 4 11 11 N 6.87173 * 109.49832 * 359.64964 * 2 1 3 12 12 C 1.38281 * 120.33994 * 359.97438 * 9 8 4 13 13 C 1.39993 * 119.76023 * 269.93573 * 3 2 1 14 14 C 1.41350 * 119.95854 * 0.03996 * 13 3 2 15 15 H 1.07998 * 120.00008 * 25.81786 * 14 13 3 16 16 C 1.39830 * 120.00065 * 205.81255 * 14 13 3 17 17 N 1.30913 * 120.00000 * 15.50943 * 16 14 13 18 18 Si 1.86805 * 120.00051 * 195.50350 * 16 14 13 19 19 H 1.48493 * 109.46877 * 94.96871 * 18 16 14 20 20 H 1.48496 * 109.47049 * 214.96870 * 18 16 14 21 21 H 1.48494 * 109.46804 * 334.96884 * 18 16 14 22 22 H 1.09004 * 109.46981 * 300.00370 * 1 2 3 23 23 H 1.09000 * 109.46930 * 59.99985 * 1 2 3 24 24 H 1.08996 * 109.47132 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47204 * 239.99402 * 2 1 3 26 26 H 1.09008 * 109.46853 * 119.99692 * 2 1 3 27 27 H 1.08003 * 122.55040 * 359.97438 * 5 4 3 28 28 H 1.08005 * 124.25002 * 179.75268 * 6 5 4 29 29 H 1.08000 * 120.10961 * 179.97438 * 12 9 8 30 30 H 0.96995 * 119.99883 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2648 2.0783 1.2197 5 6 2.0888 1.5822 2.5777 6 6 2.3884 2.4446 3.5262 7 16 2.9341 3.9703 2.8582 8 6 2.7320 3.3982 1.2062 9 6 2.9661 4.0569 -0.0269 10 6 3.4445 5.4066 -0.0341 11 7 3.8236 6.4775 -0.0396 12 6 2.7359 3.4025 -1.2231 13 6 2.2653 2.0755 -1.2153 14 6 2.0282 1.4033 -2.4359 15 1 1.3105 0.5973 -2.4780 16 6 2.7227 1.7820 -3.5890 17 7 3.7918 2.5314 -3.4927 18 14 2.1250 1.2185 -5.2667 19 1 1.2662 2.2715 -5.8656 20 1 3.2924 0.9700 -6.1502 21 1 1.3414 -0.0341 -5.1179 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 1.7350 0.5842 2.7905 28 1 2.3098 2.2373 4.5833 29 1 2.9152 3.9081 -2.1605 30 1 4.2733 2.7944 -4.2926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396213576.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:13 Heat of formation + Delta-G solvation = 36.894303 kcal Electronic energy + Delta-G solvation = -16014.982452 eV Core-core repulsion = 13479.188893 eV Total energy + Delta-G solvation = -2535.793559 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32586 -37.72211 -36.67806 -34.69114 -34.60617 -30.99415 -29.70176 -27.40082 -25.08973 -24.14291 -22.10176 -21.52322 -19.85879 -18.49088 -17.39008 -16.93058 -16.38064 -15.79354 -15.17900 -15.05535 -14.80119 -14.51247 -14.30532 -14.02591 -13.75594 -13.56350 -13.19100 -13.05261 -12.87822 -12.66124 -12.52401 -12.43729 -11.90179 -11.76971 -11.55508 -11.31281 -11.06941 -10.99592 -9.96870 -9.17337 -8.74516 -8.44879 -6.30223 0.02684 0.35706 0.90866 1.31566 1.34006 1.46040 1.57680 1.62112 1.68656 2.19058 2.22612 2.72625 3.08456 3.56170 4.04934 4.38799 4.45729 4.55792 4.70586 4.83357 4.93732 5.03133 5.08526 5.22233 5.27297 5.30368 5.33379 5.51454 5.58810 5.68407 5.76430 5.99172 6.17400 6.40018 6.54683 6.83883 6.89206 8.29399 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.008412 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.972717 B = 3327.936214 C = 4532.874626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.061 4.061 3 C -0.143 4.143 4 C -0.049 4.049 5 C -0.118 4.118 6 C -0.181 4.181 7 S 0.008 5.992 8 C -0.208 4.208 9 C -0.021 4.021 10 C 0.281 3.719 11 N -0.473 5.473 12 C -0.078 4.078 13 C 0.082 3.918 14 C -0.462 4.462 15 H 0.098 0.902 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.977 3.023 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.249 1.249 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.167 0.833 28 H 0.197 0.803 29 H 0.121 0.879 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 -6.654 5.830 10.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.056 4.056 5 C -0.148 4.148 6 C -0.314 4.314 7 S 0.268 5.732 8 C -0.325 4.325 9 C -0.029 4.029 10 C -0.032 4.032 11 N -0.150 5.150 12 C -0.102 4.102 13 C 0.078 3.922 14 C -0.491 4.491 15 H 0.116 0.884 16 C -0.180 4.180 17 N -0.453 5.453 18 Si 0.798 3.202 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.172 1.172 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.184 0.816 28 H 0.214 0.786 29 H 0.138 0.862 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.647 -3.572 6.394 8.182 hybrid contribution -0.315 -1.264 -1.638 2.092 sum -3.962 -4.836 4.756 7.855 Atomic orbital electron populations 1.21656 0.94760 1.01592 1.01245 1.20221 0.96011 0.91714 1.01848 1.20065 1.08002 0.96898 0.89842 1.19129 1.00592 0.91648 0.94216 1.21138 1.02790 1.01615 0.89276 1.25122 1.06693 0.95364 1.04178 1.83751 1.74163 1.18331 0.96972 1.22100 1.16313 0.99373 0.94693 1.15306 1.08386 0.85817 0.93413 1.26243 0.92096 0.93027 0.91879 1.81036 1.11984 1.12565 1.09383 1.21499 0.99089 0.95167 0.94458 1.17435 0.90901 0.90398 0.93454 1.19840 1.20637 1.16428 0.92211 0.88358 1.26751 0.92994 0.93317 1.04938 1.69845 1.13406 1.28940 1.33144 0.85231 0.78747 0.79953 0.76239 1.19303 1.20068 1.17215 0.93046 0.93982 0.91179 0.91841 0.91118 0.81615 0.78648 0.86153 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.84 71.98 0.71 -3.16 16 2 C -0.06 -2.01 5.25 29.85 0.16 -1.85 16 3 C -0.14 -5.87 5.26 -18.89 -0.10 -5.97 16 4 C -0.05 -1.92 5.96 -20.38 -0.12 -2.05 16 5 C -0.12 -3.57 9.78 23.54 0.23 -3.34 16 6 C -0.18 -5.04 11.00 67.17 0.74 -4.30 16 7 S 0.01 0.29 22.92 -56.49 -1.29 -1.00 16 8 C -0.21 -8.78 6.37 23.57 0.15 -8.63 16 9 C -0.02 -0.96 5.75 -21.15 -0.12 -1.09 16 10 C 0.28 12.85 15.04 88.33 1.33 14.18 16 11 N -0.47 -21.76 18.54 19.00 0.35 -21.41 16 12 C -0.08 -3.80 8.32 22.91 0.19 -3.61 16 13 C 0.08 3.82 5.55 -21.46 -0.12 3.70 16 14 C -0.46 -21.04 8.07 23.42 0.19 -20.85 16 15 H 0.10 4.17 6.42 -2.91 -0.02 4.16 16 16 C 0.04 1.58 5.17 85.22 0.44 2.02 16 17 N -0.83 -39.68 10.89 21.81 0.24 -39.45 16 18 Si 0.98 34.42 29.59 68.60 2.03 36.44 16 19 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.28 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.04 1.32 7.81 -2.39 -0.02 1.30 16 24 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 2.23 6.70 -2.39 -0.02 2.21 16 26 H 0.07 2.02 7.22 -2.38 -0.02 2.01 16 27 H 0.17 3.93 7.50 -2.91 -0.02 3.90 16 28 H 0.20 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.12 6.15 6.14 -2.91 -0.02 6.13 16 30 H 0.29 12.80 8.30 -92.71 -0.77 12.03 16 Total: -1.00 -53.25 279.04 6.18 -47.07 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 1.18 Total: 13.28 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 3.67 Total: -34.95 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.59 Total: -60.86 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.44 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.29 Total: -1.00 kcal Total: -53.25 6.18 -47.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396213576.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.967 kcal (2) G-P(sol) polarization free energy of solvation -53.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds