Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46918 * 2 1 4 4 C 1.39176 * 120.00646 * 90.00241 * 3 2 1 5 5 C 1.43192 * 119.64145 * 0.02562 * 4 3 2 6 6 N 3.53899 * 94.90513 * 75.99488 * 2 1 3 7 7 C 1.39511 * 120.72191 * 180.02562 * 4 3 2 8 8 C 1.39276 * 121.33395 * 0.02562 * 7 4 3 9 9 S 1.76108 * 130.45125 * 179.97438 * 8 7 4 10 10 C 1.75504 * 91.50147 * 180.02562 * 9 8 7 11 11 C 1.32840 * 110.66421 * 359.97438 * 10 9 8 12 12 C 1.39833 * 115.85470 * 0.02562 * 11 10 9 13 13 C 1.39941 * 120.00290 * 270.25033 * 3 2 1 14 14 C 1.40666 * 120.30039 * 359.75714 * 13 3 2 15 15 H 1.08006 * 120.00102 * 40.32651 * 14 13 3 16 16 C 1.39982 * 120.00395 * 220.32836 * 14 13 3 17 17 N 1.30840 * 119.99818 * 19.69470 * 16 14 13 18 18 Si 1.86800 * 119.99958 * 199.69778 * 16 14 13 19 19 H 1.48497 * 109.47340 * 59.99643 * 18 16 14 20 20 H 1.48501 * 109.46716 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47029 * 299.99551 * 18 16 14 22 22 H 1.08998 * 109.47152 * 299.99740 * 1 2 3 23 23 H 1.08992 * 109.47065 * 60.00355 * 1 2 3 24 24 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47015 * 239.99725 * 2 1 3 26 26 H 1.09001 * 109.47305 * 120.00185 * 2 1 3 27 27 H 1.07993 * 119.33647 * 180.02562 * 7 4 3 28 28 H 1.07998 * 124.66849 * 179.97438 * 10 9 8 29 29 H 1.08006 * 122.06835 * 180.02562 * 11 10 9 30 30 H 0.96993 * 120.00025 * 183.37345 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0770 1.2052 5 6 2.0237 1.3946 2.4409 6 7 1.8326 0.8533 3.4212 7 6 2.7288 3.3924 1.2226 8 6 2.9740 4.0896 0.0422 9 16 3.5533 5.7327 -0.2152 10 6 3.4817 5.5344 -1.9575 11 6 3.0528 4.3175 -2.2735 12 6 2.7570 3.4763 -1.1964 13 6 2.2605 2.0823 -1.2119 14 6 2.0281 1.4254 -2.4338 15 1 1.1639 0.7878 -2.5483 16 6 2.9169 1.5979 -3.5014 17 7 4.1312 2.0310 -3.2783 18 14 2.3691 1.2098 -5.2447 19 1 1.2094 2.0660 -5.6013 20 1 3.4877 1.4736 -6.1852 21 1 1.9752 -0.2193 -5.3332 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.9016 3.8800 2.1706 28 1 3.7495 6.2967 -2.6741 29 1 2.9395 3.9977 -3.2990 30 1 4.7311 2.1972 -4.0221 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214289.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = 52.417737 kcal Electronic energy + Delta-G solvation = -16225.296775 eV Core-core repulsion = 13690.176363 eV Total energy + Delta-G solvation = -2535.120412 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.70738 -36.24654 -34.67271 -33.97503 -32.18492 -29.70400 -28.21602 -25.55115 -23.61303 -22.44304 -21.06443 -19.36950 -18.39053 -16.42932 -16.04620 -15.51286 -14.87058 -14.34891 -13.57350 -13.41358 -13.18941 -12.85502 -12.67733 -12.43201 -12.17516 -11.98731 -11.75667 -11.59271 -11.48789 -11.35058 -11.05428 -10.80527 -10.52772 -10.29705 -10.04835 -9.83972 -9.49584 -9.21264 -8.31145 -7.38281 -7.20932 -6.68134 -4.69154 1.38416 2.41296 2.50261 2.85315 2.92679 2.92887 2.95130 3.07343 3.36068 3.71427 3.98864 4.36607 4.75651 5.12054 5.65489 5.75747 5.90941 5.98305 6.14564 6.29836 6.36254 6.51800 6.59369 6.73099 6.75564 6.79201 6.92492 7.02922 7.07102 7.38415 7.46664 7.53184 7.70077 8.07258 8.15877 8.42253 8.48700 9.84650 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.011167 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.441270 B = 2506.721203 C = 4103.624544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.156 4.156 4 C 0.023 3.977 5 C 0.281 3.719 6 N -0.464 5.464 7 C -0.166 4.166 8 C -0.090 4.090 9 S 0.009 5.991 10 C -0.259 4.259 11 C -0.038 4.038 12 C -0.109 4.109 13 C 0.171 3.829 14 C -0.449 4.449 15 H 0.094 0.906 16 C 0.080 3.920 17 N -0.766 5.766 18 Si 0.900 3.100 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.261 1.261 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.130 0.870 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 2.280 -2.442 3.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 C -0.162 4.162 4 C 0.017 3.983 5 C -0.033 4.033 6 N -0.141 5.141 7 C -0.193 4.193 8 C -0.206 4.206 9 S 0.270 5.730 10 C -0.392 4.392 11 C -0.067 4.067 12 C -0.117 4.117 13 C 0.166 3.834 14 C -0.476 4.476 15 H 0.112 0.888 16 C -0.142 4.142 17 N -0.388 5.388 18 Si 0.723 3.277 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.185 1.185 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.122 0.878 28 H 0.164 0.836 29 H 0.148 0.852 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.240 2.705 -0.178 2.981 hybrid contribution -0.233 -0.896 -2.161 2.351 sum -1.473 1.809 -2.339 3.304 Atomic orbital electron populations 1.21731 0.96369 1.00191 1.01646 1.20194 0.94778 0.93501 1.01584 1.19510 1.10542 0.95567 0.90616 1.15449 1.04333 0.92689 0.85790 1.26138 0.92280 0.92227 0.92620 1.81092 1.10943 1.10173 1.11856 1.19365 1.11367 0.93464 0.95076 1.22088 1.05386 0.96067 0.97010 1.83515 1.73137 1.12787 1.03589 1.24769 1.15836 1.02009 0.96598 1.19827 0.95729 0.91174 0.99974 1.19244 1.08052 0.94457 0.89986 1.17998 0.86001 0.87755 0.91641 1.19419 1.08364 1.24708 0.95156 0.88819 1.25912 0.93792 0.93137 1.01360 1.69840 1.04086 1.29808 1.35103 0.86469 0.79740 0.80585 0.80900 1.18368 1.20042 1.18529 0.93796 0.92185 0.93755 0.90266 0.93558 0.87803 0.83562 0.85248 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 37.16 0.37 -2.02 16 2 C -0.06 -1.20 5.09 -27.88 -0.14 -1.34 16 3 C -0.16 -3.32 5.21 -103.64 -0.54 -3.86 16 4 C 0.02 0.49 5.71 -107.15 -0.61 -0.13 16 5 C 0.28 5.64 13.69 -22.48 -0.31 5.34 16 6 N -0.46 -9.51 18.54 41.84 0.78 -8.74 16 7 C -0.17 -3.42 9.70 -38.72 -0.38 -3.80 16 8 C -0.09 -1.94 6.47 -38.57 -0.25 -2.19 16 9 S 0.01 0.17 23.30 -107.50 -2.50 -2.34 16 10 C -0.26 -4.92 11.12 28.87 0.32 -4.59 16 11 C -0.04 -0.80 8.26 -40.84 -0.34 -1.14 16 12 C -0.11 -2.48 5.51 -104.68 -0.58 -3.05 16 13 C 0.17 3.89 5.49 -104.35 -0.57 3.32 16 14 C -0.45 -9.91 7.57 -38.01 -0.29 -10.20 16 15 H 0.09 1.96 7.04 -52.48 -0.37 1.60 16 16 C 0.08 1.70 3.85 -17.32 -0.07 1.64 16 17 N -0.77 -17.17 10.84 55.55 0.60 -16.57 16 18 Si 0.90 16.11 29.60 -169.99 -5.03 11.08 16 19 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 20 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 22 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 1.01 7.65 -51.93 -0.40 0.61 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 1.52 7.01 -51.93 -0.36 1.15 16 26 H 0.05 0.86 7.04 -51.93 -0.37 0.50 16 27 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.13 2.74 6.08 -52.48 -0.32 2.42 16 30 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 LS Contribution 276.66 15.07 4.17 4.17 Total: -1.00 -23.51 276.66 -8.01 -31.52 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -2.64 Total: 2.90 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -3.38 Total: -22.02 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: 1.38 Total: -25.31 kcal Atomic # 14 Polarization: 16.11 SS G_CDS: -5.03 Total: 11.08 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.50 Total: -2.34 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -23.51 -8.01 -31.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214289.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.933 kcal (2) G-P(sol) polarization free energy of solvation -23.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds