Wall clock time and date at job start Mon Mar 30 2020 06:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46918 * 2 1 4 4 C 1.39176 * 120.00646 * 90.00241 * 3 2 1 5 5 C 1.43192 * 119.64145 * 0.02562 * 4 3 2 6 6 N 3.53899 * 94.90513 * 75.99488 * 2 1 3 7 7 C 1.39511 * 120.72191 * 180.02562 * 4 3 2 8 8 C 1.39276 * 121.33395 * 0.02562 * 7 4 3 9 9 S 1.76108 * 130.45125 * 179.97438 * 8 7 4 10 10 C 1.75504 * 91.50147 * 180.02562 * 9 8 7 11 11 C 1.32840 * 110.66421 * 359.97438 * 10 9 8 12 12 C 1.39833 * 115.85470 * 0.02562 * 11 10 9 13 13 C 1.39941 * 120.00290 * 270.25033 * 3 2 1 14 14 C 1.40666 * 120.30039 * 359.75714 * 13 3 2 15 15 H 1.08006 * 120.00102 * 40.32651 * 14 13 3 16 16 C 1.39982 * 120.00395 * 220.32836 * 14 13 3 17 17 N 1.30840 * 119.99818 * 19.69470 * 16 14 13 18 18 Si 1.86800 * 119.99958 * 199.69778 * 16 14 13 19 19 H 1.48497 * 109.47340 * 59.99643 * 18 16 14 20 20 H 1.48501 * 109.46716 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47029 * 299.99551 * 18 16 14 22 22 H 1.08998 * 109.47152 * 299.99740 * 1 2 3 23 23 H 1.08992 * 109.47065 * 60.00355 * 1 2 3 24 24 H 1.09004 * 109.46764 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47015 * 239.99725 * 2 1 3 26 26 H 1.09001 * 109.47305 * 120.00185 * 2 1 3 27 27 H 1.07993 * 119.33647 * 180.02562 * 7 4 3 28 28 H 1.07998 * 124.66849 * 179.97438 * 10 9 8 29 29 H 1.08006 * 122.06835 * 180.02562 * 11 10 9 30 30 H 0.96993 * 120.00025 * 183.37345 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2643 2.0770 1.2052 5 6 2.0237 1.3946 2.4409 6 7 1.8326 0.8533 3.4212 7 6 2.7288 3.3924 1.2226 8 6 2.9740 4.0896 0.0422 9 16 3.5533 5.7327 -0.2152 10 6 3.4817 5.5344 -1.9575 11 6 3.0528 4.3175 -2.2735 12 6 2.7570 3.4763 -1.1964 13 6 2.2605 2.0823 -1.2119 14 6 2.0281 1.4254 -2.4338 15 1 1.1639 0.7878 -2.5483 16 6 2.9169 1.5979 -3.5014 17 7 4.1312 2.0310 -3.2783 18 14 2.3691 1.2098 -5.2447 19 1 1.2094 2.0660 -5.6013 20 1 3.4877 1.4736 -6.1852 21 1 1.9752 -0.2193 -5.3332 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 2.9016 3.8800 2.1706 28 1 3.7495 6.2967 -2.6741 29 1 2.9395 3.9977 -3.2990 30 1 4.7311 2.1972 -4.0221 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214289.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:11 Heat of formation + Delta-G solvation = 43.957575 kcal Electronic energy + Delta-G solvation = -16225.663635 eV Core-core repulsion = 13690.176363 eV Total energy + Delta-G solvation = -2535.487273 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.30788 -37.85930 -36.25058 -35.58410 -33.72181 -31.30714 -29.77723 -27.16981 -25.16382 -24.00441 -22.62712 -20.97322 -19.98581 -18.06401 -17.61036 -17.06578 -16.42793 -15.89385 -15.10987 -14.98639 -14.73377 -14.41206 -14.20670 -14.02174 -13.67945 -13.56939 -13.31350 -13.11966 -12.99717 -12.84783 -12.62901 -12.26725 -11.99243 -11.80678 -11.55374 -11.41873 -11.07488 -10.80433 -9.91302 -8.98672 -8.80044 -8.24273 -6.34304 -0.23114 0.78674 0.94620 1.32629 1.36289 1.47066 1.54017 1.58341 1.74138 2.23051 2.36610 2.75948 3.12578 3.48105 4.15292 4.24161 4.43103 4.47526 4.70293 4.80517 4.82107 5.01285 5.09153 5.16228 5.20650 5.25337 5.40882 5.45474 5.52934 5.77188 5.87284 5.90899 6.08904 6.42418 6.54048 6.80303 6.84918 8.28132 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.011167 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.441270 B = 2506.721203 C = 4103.624544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.059 4.059 3 C -0.166 4.166 4 C 0.014 3.986 5 C 0.291 3.709 6 N -0.470 5.470 7 C -0.165 4.165 8 C -0.121 4.121 9 S 0.055 5.945 10 C -0.246 4.246 11 C -0.064 4.064 12 C -0.127 4.127 13 C 0.145 3.855 14 C -0.468 4.468 15 H 0.097 0.903 16 C 0.052 3.948 17 N -0.797 5.797 18 Si 0.960 3.040 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.259 1.259 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.121 0.879 28 H 0.178 0.822 29 H 0.124 0.876 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 2.883 -2.838 4.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.173 4.173 4 C 0.008 3.992 5 C -0.022 4.022 6 N -0.147 5.147 7 C -0.192 4.192 8 C -0.236 4.236 9 S 0.316 5.684 10 C -0.379 4.379 11 C -0.094 4.094 12 C -0.136 4.136 13 C 0.140 3.860 14 C -0.496 4.496 15 H 0.114 0.886 16 C -0.167 4.167 17 N -0.420 5.420 18 Si 0.782 3.218 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.184 1.184 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.195 0.805 29 H 0.142 0.858 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.408 3.309 -0.556 3.639 hybrid contribution -0.142 -0.992 -1.973 2.213 sum -1.550 2.317 -2.530 3.764 Atomic orbital electron populations 1.21659 0.94694 1.01598 1.01234 1.20178 0.96182 0.92187 1.01145 1.19784 1.10420 0.96552 0.90523 1.15515 1.04769 0.93018 0.85866 1.25955 0.91989 0.91954 0.92309 1.81097 1.11258 1.10359 1.11987 1.19610 1.10435 0.93472 0.95674 1.22424 1.06249 0.97981 0.96946 1.83292 1.72030 1.10314 1.02768 1.25226 1.13179 1.01779 0.97746 1.19845 0.97854 0.92094 0.99586 1.19559 1.08192 0.94848 0.90987 1.18318 0.86888 0.88356 0.92429 1.19594 1.08840 1.25425 0.95760 0.88565 1.26505 0.93434 0.92584 1.04171 1.69885 1.04986 1.30990 1.36171 0.85551 0.79214 0.80229 0.76832 1.18260 1.19686 1.18354 0.94180 0.92543 0.91432 0.90900 0.93614 0.86138 0.80455 0.85794 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.89 71.98 0.71 -3.70 16 2 C -0.06 -2.25 5.09 29.85 0.15 -2.09 16 3 C -0.17 -7.13 5.21 -19.23 -0.10 -7.23 16 4 C 0.01 0.59 5.71 -21.50 -0.12 0.47 16 5 C 0.29 11.50 13.69 88.33 1.21 12.71 16 6 N -0.47 -18.82 18.54 19.00 0.35 -18.47 16 7 C -0.17 -6.71 9.70 22.83 0.22 -6.49 16 8 C -0.12 -5.12 6.47 22.92 0.15 -4.97 16 9 S 0.05 1.93 23.30 -56.49 -1.32 0.62 16 10 C -0.25 -8.86 11.12 66.64 0.74 -8.12 16 11 C -0.06 -2.71 8.26 21.48 0.18 -2.53 16 12 C -0.13 -5.79 5.51 -19.91 -0.11 -5.90 16 13 C 0.14 6.68 5.49 -19.69 -0.11 6.57 16 14 C -0.47 -20.91 7.57 23.29 0.18 -20.73 16 15 H 0.10 4.08 7.04 -2.91 -0.02 4.06 16 16 C 0.05 2.23 3.85 85.26 0.33 2.56 16 17 N -0.80 -35.94 10.84 21.84 0.24 -35.71 16 18 Si 0.96 32.74 29.60 68.60 2.03 34.77 16 19 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 20 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 21 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16 22 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.87 7.65 -2.39 -0.02 1.85 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.81 7.01 -2.39 -0.02 2.79 16 26 H 0.05 1.69 7.04 -2.39 -0.02 1.68 16 27 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.18 5.14 8.06 -2.91 -0.02 5.11 16 29 H 0.12 5.25 6.08 -2.91 -0.02 5.23 16 30 H 0.29 12.12 8.30 -92.71 -0.77 11.35 16 Total: -1.00 -48.84 276.66 5.90 -42.93 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.18 Total: 15.29 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 3.42 Total: -39.44 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.59 Total: -54.18 kcal Atomic # 14 Polarization: 32.74 SS G_CDS: 2.03 Total: 34.77 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -1.32 Total: 0.62 kcal Total: -48.84 5.90 -42.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214289.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.890 kcal (2) G-P(sol) polarization free energy of solvation -48.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds