Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47467 * 2 1 4 4 C 1.32454 * 122.03719 * 265.01998 * 3 2 1 5 5 S 1.75476 * 110.79915 * 179.97438 * 4 3 2 6 6 C 1.76034 * 91.51650 * 359.97438 * 5 4 3 7 7 C 1.40094 * 109.49999 * 0.02562 * 6 5 4 8 8 C 1.41997 * 119.51692 * 179.97438 * 7 6 5 9 9 C 1.35048 * 121.97226 * 359.70337 * 8 7 6 10 10 C 1.41248 * 120.57451 * 0.58220 * 9 8 7 11 11 C 1.40330 * 120.61828 * 179.70616 * 10 9 8 12 12 H 1.08002 * 119.99986 * 206.30122 * 11 10 9 13 13 C 1.40252 * 119.99850 * 26.30651 * 11 10 9 14 14 N 1.30670 * 120.00018 * 203.46901 * 13 11 10 15 15 Si 1.86796 * 120.00276 * 23.46717 * 13 11 10 16 16 H 1.48500 * 109.47460 * 263.26308 * 15 13 11 17 17 H 1.48505 * 109.46840 * 23.26097 * 15 13 11 18 18 H 1.48499 * 109.47411 * 143.25954 * 15 13 11 19 19 C 1.40657 * 130.38526 * 179.97438 * 6 5 4 20 20 C 1.43196 * 120.47070 * 0.02600 * 19 6 5 21 21 N 7.25061 * 107.84467 * 13.46163 * 2 1 3 22 22 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47407 * 300.00697 * 1 2 3 24 24 H 1.09007 * 109.46679 * 59.99690 * 1 2 3 25 25 H 1.09002 * 109.47553 * 239.99820 * 2 1 3 26 26 H 1.09000 * 109.47002 * 120.00120 * 2 1 3 27 27 H 1.08003 * 124.59906 * 359.95916 * 4 3 2 28 28 H 1.07999 * 119.01306 * 179.97438 * 8 7 6 29 29 H 1.08003 * 119.71415 * 180.31717 * 9 8 7 30 30 H 0.97000 * 120.00135 * 353.13610 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3585 2.0507 -1.1186 5 16 2.9036 3.6835 -0.7780 6 6 2.6615 3.4538 0.9505 7 6 2.1826 2.1588 1.1876 8 6 1.9132 1.7454 2.5191 9 6 2.1102 2.5633 3.5755 10 6 2.5860 3.8797 3.3860 11 6 2.7852 4.7324 4.4826 12 1 2.7297 5.8030 4.3513 13 6 3.0564 4.1944 5.7491 14 7 2.7955 4.8900 6.8240 15 14 3.7907 2.4834 5.8994 16 1 2.7062 1.4991 6.1451 17 1 4.4984 2.1362 4.6408 18 1 4.7513 2.4545 7.0315 19 6 2.8735 4.3357 2.0255 20 6 3.3634 5.6609 1.7920 21 7 3.7518 6.7122 1.6067 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2975 1.6180 -2.1063 28 1 1.5438 0.7455 2.6925 29 1 1.8980 2.2093 4.5735 30 1 2.5085 5.8133 6.7464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214377.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = 38.304946 kcal Electronic energy + Delta-G solvation = -15880.074108 eV Core-core repulsion = 13344.341719 eV Total energy + Delta-G solvation = -2535.732389 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.85206 -36.33648 -35.10066 -33.90479 -31.70916 -30.22788 -29.20971 -25.38550 -24.13985 -22.14169 -21.60163 -19.57588 -18.85748 -17.29528 -16.04248 -15.25110 -14.67507 -14.56039 -14.00931 -13.89300 -13.33761 -13.23443 -13.00845 -12.46380 -12.12556 -11.99957 -11.94879 -11.63836 -11.58045 -11.25863 -11.09922 -10.76048 -10.60428 -10.44325 -10.12926 -9.96417 -9.78100 -9.36435 -8.66223 -8.08644 -7.68238 -7.03643 -5.04983 1.56669 1.91594 2.32003 2.75355 2.75963 2.95346 3.12470 3.28388 3.60902 3.79097 3.98313 4.24786 5.01502 5.11177 5.27274 5.36216 5.53028 5.60942 5.78396 5.91502 6.03877 6.05940 6.12747 6.30575 6.39999 6.47624 6.63487 6.80435 6.90540 7.17055 7.21237 7.27911 7.37352 7.78645 7.88896 8.13850 8.68678 9.34797 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.008569 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.161175 B = 3266.747725 C = 4341.898217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.034 4.034 4 C -0.267 4.267 5 S 0.024 5.976 6 C -0.004 4.004 7 C -0.208 4.208 8 C -0.013 4.013 9 C -0.212 4.212 10 C 0.142 3.858 11 C -0.447 4.447 12 H 0.090 0.910 13 C 0.040 3.960 14 N -0.759 5.759 15 Si 1.067 2.933 16 H -0.266 1.266 17 H -0.251 1.251 18 H -0.279 1.279 19 C -0.175 4.175 20 C 0.295 3.705 21 N -0.498 5.498 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -10.345 -5.397 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.046 4.046 4 C -0.400 4.400 5 S 0.287 5.713 6 C -0.122 4.122 7 C -0.215 4.215 8 C -0.033 4.033 9 C -0.231 4.231 10 C 0.133 3.867 11 C -0.473 4.473 12 H 0.108 0.892 13 C -0.187 4.187 14 N -0.377 5.377 15 Si 0.889 3.111 16 H -0.192 1.192 17 H -0.175 1.175 18 H -0.206 1.206 19 C -0.189 4.189 20 C -0.015 4.015 21 N -0.177 5.177 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.094 -8.594 -5.506 10.265 hybrid contribution -1.223 -0.009 -0.141 1.231 sum -2.317 -8.603 -5.648 10.549 Atomic orbital electron populations 1.21714 0.95075 1.00954 1.02425 1.20280 0.95809 0.92446 1.02125 1.18516 0.98485 0.96012 0.91554 1.24352 1.16409 0.98090 1.01114 1.83985 1.72276 1.14432 1.00632 1.22225 0.99373 0.96376 0.94267 1.17402 1.16875 0.93726 0.93450 1.20285 0.94790 0.97651 0.90588 1.20605 1.08905 0.95437 0.98184 1.18335 0.87409 0.91222 0.89711 1.20994 1.35792 0.96858 0.93636 0.89225 1.27818 0.92162 1.07921 0.90786 1.70436 1.23628 1.11326 1.32346 0.83703 0.77759 0.71433 0.78222 1.19176 1.17498 1.20567 1.15864 1.22681 0.88284 0.92071 1.25533 0.91709 0.92399 0.91864 1.81025 1.14869 1.12354 1.09491 0.92947 0.92224 0.92839 0.91703 0.91111 0.83378 0.87478 0.86447 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.89 37.16 0.37 -1.32 16 2 C -0.07 -0.86 5.88 -27.88 -0.16 -1.03 16 3 C -0.03 -0.57 5.08 -105.64 -0.54 -1.11 16 4 C -0.27 -4.42 10.79 28.81 0.31 -4.11 16 5 S 0.02 0.45 23.00 -107.50 -2.47 -2.03 16 6 C 0.00 -0.09 6.34 -37.97 -0.24 -0.33 16 7 C -0.21 -4.06 5.86 -106.86 -0.63 -4.69 16 8 C -0.01 -0.23 9.53 -39.28 -0.37 -0.61 16 9 C -0.21 -4.32 7.24 -39.57 -0.29 -4.61 16 10 C 0.14 3.25 5.30 -104.71 -0.56 2.69 16 11 C -0.45 -10.67 8.88 -38.04 -0.34 -11.00 16 12 H 0.09 2.30 7.56 -52.49 -0.40 1.90 16 13 C 0.04 0.90 5.35 -17.29 -0.09 0.81 16 14 N -0.76 -17.55 13.64 55.56 0.76 -16.79 16 15 Si 1.07 20.27 24.99 -169.99 -4.25 16.03 16 16 H -0.27 -4.59 6.69 56.52 0.38 -4.22 16 17 H -0.25 -4.78 6.99 56.52 0.40 -4.39 16 18 H -0.28 -5.20 7.11 56.52 0.40 -4.79 16 19 C -0.18 -4.08 5.97 -103.80 -0.62 -4.70 16 20 C 0.29 7.15 14.06 -22.48 -0.32 6.83 16 21 N -0.50 -12.38 18.54 41.84 0.78 -11.61 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 26 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 27 H 0.15 2.05 8.06 -52.48 -0.42 1.63 16 28 H 0.11 1.63 7.42 -52.49 -0.39 1.24 16 29 H 0.12 2.23 4.69 -52.48 -0.25 1.99 16 30 H 0.30 6.74 8.73 -40.82 -0.36 6.38 16 LS Contribution 277.58 15.07 4.18 4.18 Total: -1.00 -25.04 277.58 -7.19 -32.23 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -2.71 Total: 1.16 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.47 Total: -23.17 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 1.53 Total: -28.40 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.25 Total: 16.03 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.47 Total: -2.03 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -25.04 -7.19 -32.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214377.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.537 kcal (2) G-P(sol) polarization free energy of solvation -25.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds