Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47467 * 2 1 4 4 C 1.32454 * 122.03719 * 265.01998 * 3 2 1 5 5 S 1.75476 * 110.79915 * 179.97438 * 4 3 2 6 6 C 1.76034 * 91.51650 * 359.97438 * 5 4 3 7 7 C 1.40094 * 109.49999 * 0.02562 * 6 5 4 8 8 C 1.41997 * 119.51692 * 179.97438 * 7 6 5 9 9 C 1.35048 * 121.97226 * 359.70337 * 8 7 6 10 10 C 1.41248 * 120.57451 * 0.58220 * 9 8 7 11 11 C 1.40330 * 120.61828 * 179.70616 * 10 9 8 12 12 H 1.08002 * 119.99986 * 206.30122 * 11 10 9 13 13 C 1.40252 * 119.99850 * 26.30651 * 11 10 9 14 14 N 1.30670 * 120.00018 * 203.46901 * 13 11 10 15 15 Si 1.86796 * 120.00276 * 23.46717 * 13 11 10 16 16 H 1.48500 * 109.47460 * 263.26308 * 15 13 11 17 17 H 1.48505 * 109.46840 * 23.26097 * 15 13 11 18 18 H 1.48499 * 109.47411 * 143.25954 * 15 13 11 19 19 C 1.40657 * 130.38526 * 179.97438 * 6 5 4 20 20 C 1.43196 * 120.47070 * 0.02600 * 19 6 5 21 21 N 7.25061 * 107.84467 * 13.46163 * 2 1 3 22 22 H 1.08993 * 109.47174 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47407 * 300.00697 * 1 2 3 24 24 H 1.09007 * 109.46679 * 59.99690 * 1 2 3 25 25 H 1.09002 * 109.47553 * 239.99820 * 2 1 3 26 26 H 1.09000 * 109.47002 * 120.00120 * 2 1 3 27 27 H 1.08003 * 124.59906 * 359.95916 * 4 3 2 28 28 H 1.07999 * 119.01306 * 179.97438 * 8 7 6 29 29 H 1.08003 * 119.71415 * 180.31717 * 9 8 7 30 30 H 0.97000 * 120.00135 * 353.13610 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3585 2.0507 -1.1186 5 16 2.9036 3.6835 -0.7780 6 6 2.6615 3.4538 0.9505 7 6 2.1826 2.1588 1.1876 8 6 1.9132 1.7454 2.5191 9 6 2.1102 2.5633 3.5755 10 6 2.5860 3.8797 3.3860 11 6 2.7852 4.7324 4.4826 12 1 2.7297 5.8030 4.3513 13 6 3.0564 4.1944 5.7491 14 7 2.7955 4.8900 6.8240 15 14 3.7907 2.4834 5.8994 16 1 2.7062 1.4991 6.1451 17 1 4.4984 2.1362 4.6408 18 1 4.7513 2.4545 7.0315 19 6 2.8735 4.3357 2.0255 20 6 3.3634 5.6609 1.7920 21 7 3.7518 6.7122 1.6067 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.2975 1.6180 -2.1063 28 1 1.5438 0.7455 2.6925 29 1 1.8980 2.2093 4.5735 30 1 2.5085 5.8133 6.7464 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214377.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = 26.414613 kcal Electronic energy + Delta-G solvation = -15880.589711 eV Core-core repulsion = 13344.341719 eV Total energy + Delta-G solvation = -2536.247993 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38705 -37.91698 -36.91403 -35.47457 -32.98374 -31.84882 -30.66929 -27.00646 -25.38384 -23.58092 -23.19964 -21.03056 -20.52735 -18.79444 -17.59364 -16.82555 -16.18574 -16.04548 -15.53301 -15.23562 -14.83990 -14.55780 -14.49864 -14.06723 -13.82834 -13.63328 -13.35890 -13.04985 -12.98491 -12.75414 -12.57842 -12.11158 -12.01996 -11.63684 -11.50033 -11.47435 -11.35179 -10.91864 -10.23176 -9.79054 -9.32618 -8.57156 -6.82395 -0.00196 0.26833 0.77552 1.25771 1.32384 1.43549 1.62240 1.82270 1.88842 2.08956 2.30947 2.50468 3.29971 3.43449 4.03226 4.22330 4.33351 4.46593 4.55941 4.64295 4.68368 4.90123 4.93573 5.03678 5.11428 5.16004 5.23231 5.39047 5.51541 5.54104 5.66706 5.75040 5.87855 6.04301 6.22131 6.45488 6.80106 7.60276 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.008569 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.161175 B = 3266.747725 C = 4341.898217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.043 4.043 4 C -0.245 4.245 5 S 0.008 5.992 6 C -0.034 4.034 7 C -0.198 4.198 8 C 0.000 4.000 9 C -0.221 4.221 10 C 0.138 3.862 11 C -0.485 4.485 12 H 0.050 0.950 13 C 0.018 3.982 14 N -0.783 5.783 15 Si 1.091 2.909 16 H -0.227 1.227 17 H -0.253 1.253 18 H -0.275 1.275 19 C -0.207 4.207 20 C 0.296 3.704 21 N -0.528 5.528 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.184 0.816 28 H 0.154 0.846 29 H 0.135 0.865 30 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 -14.779 -6.994 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.054 4.054 4 C -0.378 4.378 5 S 0.272 5.728 6 C -0.153 4.153 7 C -0.205 4.205 8 C -0.020 4.020 9 C -0.240 4.240 10 C 0.130 3.870 11 C -0.512 4.512 12 H 0.068 0.932 13 C -0.203 4.203 14 N -0.401 5.401 15 Si 0.907 3.093 16 H -0.151 1.151 17 H -0.177 1.177 18 H -0.201 1.201 19 C -0.220 4.220 20 C -0.012 4.012 21 N -0.208 5.208 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.202 0.798 28 H 0.171 0.829 29 H 0.152 0.848 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.971 -13.005 -7.112 14.953 hybrid contribution -1.001 1.286 0.033 1.630 sum -2.972 -11.719 -7.079 14.009 Atomic orbital electron populations 1.21713 0.94147 1.02464 1.01713 1.20398 0.96416 0.89565 1.03984 1.18874 0.98370 0.98059 0.90126 1.24839 1.14113 0.95953 1.02866 1.84109 1.72221 1.17117 0.99387 1.22488 1.00548 0.97169 0.95051 1.17963 1.14443 0.92968 0.95110 1.20738 0.92658 0.99194 0.89442 1.20795 1.09042 0.94356 0.99811 1.18557 0.86763 0.92541 0.89115 1.20844 1.39854 0.95171 0.95347 0.93188 1.28895 0.91191 1.10380 0.89844 1.70503 1.25799 1.11184 1.32652 0.83480 0.78454 0.69138 0.78191 1.15064 1.17691 1.20138 1.16151 1.24399 0.88191 0.93274 1.25975 0.91303 0.92794 0.91166 1.80975 1.16340 1.13072 1.10441 0.90381 0.93443 0.93141 0.89386 0.89868 0.79833 0.82879 0.84803 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.89 71.98 0.71 -1.87 16 2 C -0.06 -1.27 5.88 29.85 0.18 -1.09 16 3 C -0.04 -1.25 5.08 -20.40 -0.10 -1.36 16 4 C -0.25 -7.07 10.79 66.70 0.72 -6.35 16 5 S 0.01 0.30 23.00 -56.49 -1.30 -1.00 16 6 C -0.03 -1.45 6.34 23.31 0.15 -1.30 16 7 C -0.20 -7.08 5.86 -21.31 -0.12 -7.21 16 8 C 0.00 -0.01 9.53 22.47 0.21 0.21 16 9 C -0.22 -8.55 7.24 22.28 0.16 -8.39 16 10 C 0.14 6.46 5.30 -19.92 -0.11 6.35 16 11 C -0.49 -24.51 8.88 23.27 0.21 -24.30 16 12 H 0.05 2.82 7.56 -2.91 -0.02 2.80 16 13 C 0.02 0.85 5.35 85.36 0.46 1.31 16 14 N -0.78 -37.76 13.64 21.88 0.30 -37.46 16 15 Si 1.09 39.51 24.99 68.60 1.71 41.23 16 16 H -0.23 -6.82 6.69 99.48 0.67 -6.15 16 17 H -0.25 -9.15 6.99 99.48 0.70 -8.46 16 18 H -0.28 -9.73 7.11 99.48 0.71 -9.02 16 19 C -0.21 -9.87 5.97 -19.33 -0.12 -9.99 16 20 C 0.30 15.10 14.06 88.33 1.24 16.34 16 21 N -0.53 -27.69 18.54 19.00 0.35 -27.34 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 26 H 0.08 1.50 7.48 -2.39 -0.02 1.48 16 27 H 0.18 4.02 8.06 -2.91 -0.02 3.99 16 28 H 0.15 3.70 7.42 -2.91 -0.02 3.68 16 29 H 0.13 4.71 4.69 -2.91 -0.01 4.69 16 30 H 0.29 14.02 8.73 -92.71 -0.81 13.21 16 Total: -1.00 -57.45 277.58 5.73 -51.72 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.08 Total: 10.49 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.59 Total: -37.65 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: 0.65 Total: -64.80 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.71 Total: 41.23 kcal Atomic # 16 Polarization: 0.30 SS G_CDS: -1.30 Total: -1.00 kcal Total: -57.45 5.73 -51.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214377.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.134 kcal (2) G-P(sol) polarization free energy of solvation -57.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds