Wall clock time and date at job start Mon Mar 30 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38461 * 119.88464 * 341.05858 * 3 2 1 5 5 C 1.41220 * 121.79805 * 180.02562 * 4 3 2 6 6 C 1.45462 * 128.46373 * 179.97438 * 5 4 3 7 7 C 1.31927 * 114.98987 * 180.02562 * 6 5 4 8 8 S 1.75270 * 111.37279 * 0.02562 * 7 6 5 9 9 C 1.39779 * 119.86062 * 0.02562 * 5 4 3 10 10 C 1.42348 * 120.11149 * 359.97438 * 9 5 4 11 11 C 1.40161 * 120.36983 * 180.02562 * 10 9 5 12 12 H 1.07994 * 119.99901 * 135.90822 * 11 10 9 13 13 C 1.40506 * 119.99516 * 315.90431 * 11 10 9 14 14 N 1.30515 * 120.00238 * 343.26091 * 13 11 10 15 15 Si 1.86806 * 119.99505 * 163.25592 * 13 11 10 16 16 H 1.48493 * 109.47057 * 90.00450 * 15 13 11 17 17 H 1.48502 * 109.46987 * 210.00415 * 15 13 11 18 18 H 1.48501 * 109.47228 * 329.99804 * 15 13 11 19 19 C 1.41346 * 119.88551 * 161.08616 * 3 2 1 20 20 C 1.41761 * 120.63226 * 359.97438 * 19 3 2 21 21 O 1.21420 * 120.00126 * 181.57891 * 20 19 3 22 22 H 1.07997 * 119.10512 * 0.04854 * 4 3 2 23 23 H 1.07996 * 122.50803 * 0.02562 * 6 5 4 24 24 H 1.07994 * 124.31624 * 180.26561 * 7 6 5 25 25 H 0.97003 * 119.99737 * 185.10801 * 14 13 11 26 26 H 1.08004 * 120.00199 * 1.58583 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2584 -1.1345 0.3897 5 6 4.6698 -1.1783 0.4055 6 6 5.5366 -2.2830 0.7854 7 6 6.8290 -2.0321 0.7004 8 16 7.1269 -0.3981 0.1408 9 6 5.4054 -0.0537 0.0208 10 6 4.7340 1.1335 -0.3867 11 6 5.4662 2.2642 -0.7741 12 1 5.1758 2.8205 -1.6530 13 6 6.5779 2.6738 -0.0187 14 7 6.7425 2.2258 1.1960 15 14 7.8204 3.8596 -0.7533 16 1 7.4127 5.2548 -0.4495 17 1 9.1603 3.5971 -0.1694 18 1 7.8760 3.6695 -2.2251 19 6 3.2718 1.1603 -0.3972 20 6 2.5736 2.3272 -0.7978 21 8 3.1893 3.3074 -1.1642 22 1 2.7024 -2.0106 0.6894 23 1 5.1510 -3.2373 1.1125 24 1 7.6045 -2.7440 0.9411 25 1 7.4678 2.5646 1.7438 26 1 1.4939 2.3444 -0.7769 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396214385.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:09 Heat of formation + Delta-G solvation = 30.895260 kcal Electronic energy + Delta-G solvation = -15801.656876 eV Core-core repulsion = 13129.770084 eV Total energy + Delta-G solvation = -2671.886792 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.79629 -37.11071 -36.13912 -34.68160 -33.45635 -30.43470 -29.05379 -26.21081 -24.07583 -22.63550 -20.95317 -19.75114 -18.29063 -16.79362 -16.26545 -15.60797 -15.18940 -14.92111 -13.85697 -13.60460 -13.34810 -12.96981 -12.87247 -12.70656 -12.40602 -12.20789 -12.07664 -11.86748 -11.50792 -11.36226 -11.05708 -10.82891 -10.27202 -10.06011 -9.83319 -9.35918 -8.65537 -8.23594 -7.61364 -7.34433 -6.63127 -4.89053 1.22209 1.80495 2.49837 2.69502 2.90924 2.95616 3.02336 3.06170 3.20700 3.63767 3.68896 3.73865 4.32686 4.57043 5.04458 5.39928 5.54186 5.79810 5.93691 6.21551 6.41468 6.53612 6.66753 6.75703 6.90623 7.03150 7.20185 7.32587 7.51239 8.02188 8.09165 8.17852 8.33531 8.85954 9.64287 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.011291 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.574165 B = 2479.262907 C = 3916.573518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.274 3.726 3 C 0.050 3.950 4 C -0.152 4.152 5 C -0.045 4.045 6 C -0.129 4.129 7 C -0.229 4.229 8 S 0.128 5.872 9 C -0.139 4.139 10 C 0.181 3.819 11 C -0.389 4.389 12 H 0.116 0.884 13 C 0.064 3.936 14 N -0.744 5.744 15 Si 0.915 3.085 16 H -0.262 1.262 17 H -0.269 1.269 18 H -0.252 1.252 19 C -0.283 4.283 20 C 0.366 3.634 21 O -0.486 6.486 22 H 0.109 0.891 23 H 0.129 0.871 24 H 0.151 0.849 25 H 0.297 0.703 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -4.793 0.020 6.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.040 4.040 3 C 0.044 3.956 4 C -0.177 4.177 5 C -0.054 4.054 6 C -0.161 4.161 7 C -0.364 4.364 8 S 0.395 5.605 9 C -0.256 4.256 10 C 0.174 3.826 11 C -0.414 4.414 12 H 0.133 0.867 13 C -0.160 4.160 14 N -0.366 5.366 15 Si 0.737 3.263 16 H -0.186 1.186 17 H -0.194 1.194 18 H -0.175 1.175 19 C -0.292 4.292 20 C 0.234 3.766 21 O -0.367 6.367 22 H 0.127 0.873 23 H 0.146 0.854 24 H 0.169 0.831 25 H 0.108 0.892 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.610 -3.541 -0.235 5.818 hybrid contribution -0.427 -0.592 0.422 0.843 sum 4.182 -4.134 0.186 5.883 Atomic orbital electron populations 1.81122 1.12341 1.09322 1.10244 1.26123 0.93057 0.92175 0.92599 1.15651 0.82484 0.95513 1.01937 1.19922 0.91440 0.96924 1.09393 1.18940 0.93137 0.92526 1.00820 1.20815 0.92371 0.98720 1.04209 1.25251 0.99776 1.02382 1.08951 1.83883 1.05400 1.03340 1.67848 1.23127 0.95252 0.97241 1.09995 1.17737 0.88830 0.90260 0.85821 1.20100 1.04497 1.07814 1.09025 0.86677 1.26292 0.97292 0.97713 0.94743 1.69592 1.27476 1.32850 1.06707 0.86122 0.78541 0.80400 0.81235 1.18620 1.19385 1.17544 1.20098 0.92997 0.95485 1.20598 1.21657 0.92620 0.86300 0.76070 1.90460 1.71740 1.36409 1.38077 0.87300 0.85352 0.83117 0.89165 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.93 18.54 41.84 0.78 -8.16 15 2 C 0.27 5.28 13.86 -22.47 -0.31 4.97 15 3 C 0.05 1.00 5.75 -106.71 -0.61 0.39 15 4 C -0.15 -2.93 9.69 -38.37 -0.37 -3.30 15 5 C -0.04 -0.90 6.02 -105.31 -0.63 -1.53 15 6 C -0.13 -2.21 10.37 -38.62 -0.40 -2.61 15 7 C -0.23 -3.77 11.02 28.82 0.32 -3.46 15 8 S 0.13 2.49 20.28 -107.50 -2.18 0.31 15 9 C -0.14 -3.08 5.75 -37.43 -0.22 -3.29 15 10 C 0.18 4.32 5.46 -104.38 -0.57 3.75 15 11 C -0.39 -9.40 7.29 -38.01 -0.28 -9.68 15 12 H 0.12 2.87 6.44 -52.49 -0.34 2.54 15 13 C 0.06 1.44 4.42 -17.26 -0.08 1.36 15 14 N -0.74 -16.79 10.96 55.58 0.61 -16.18 15 15 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 15 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 17 H -0.27 -4.80 7.11 56.52 0.40 -4.39 15 18 H -0.25 -4.71 7.11 56.52 0.40 -4.31 15 19 C -0.28 -6.40 5.95 -104.15 -0.62 -7.02 15 20 C 0.37 8.16 10.79 32.08 0.35 8.51 15 21 O -0.49 -12.08 14.55 5.44 0.08 -12.00 15 22 H 0.11 1.79 8.06 -52.49 -0.42 1.37 15 23 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.15 1.97 8.06 -52.49 -0.42 1.55 15 25 H 0.30 6.04 8.30 -40.82 -0.34 5.70 15 26 H 0.05 1.05 7.11 -52.48 -0.37 0.68 15 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -25.56 257.63 -6.40 -31.97 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -1.11 Total: -0.07 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -3.42 Total: -11.90 kcal Atomic # 7 Polarization: -25.72 SS G_CDS: 1.38 Total: -24.34 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.18 Total: 0.31 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.56 -6.40 -31.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214385.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.862 kcal (2) G-P(sol) polarization free energy of solvation -25.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds