Wall clock time and date at job start Mon Mar 30 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38461 * 119.88464 * 341.05858 * 3 2 1 5 5 C 1.41220 * 121.79805 * 180.02562 * 4 3 2 6 6 C 1.45462 * 128.46373 * 179.97438 * 5 4 3 7 7 C 1.31927 * 114.98987 * 180.02562 * 6 5 4 8 8 S 1.75270 * 111.37279 * 0.02562 * 7 6 5 9 9 C 1.39779 * 119.86062 * 0.02562 * 5 4 3 10 10 C 1.42348 * 120.11149 * 359.97438 * 9 5 4 11 11 C 1.40161 * 120.36983 * 180.02562 * 10 9 5 12 12 H 1.07994 * 119.99901 * 135.90822 * 11 10 9 13 13 C 1.40506 * 119.99516 * 315.90431 * 11 10 9 14 14 N 1.30515 * 120.00238 * 343.26091 * 13 11 10 15 15 Si 1.86806 * 119.99505 * 163.25592 * 13 11 10 16 16 H 1.48493 * 109.47057 * 90.00450 * 15 13 11 17 17 H 1.48502 * 109.46987 * 210.00415 * 15 13 11 18 18 H 1.48501 * 109.47228 * 329.99804 * 15 13 11 19 19 C 1.41346 * 119.88551 * 161.08616 * 3 2 1 20 20 C 1.41761 * 120.63226 * 359.97438 * 19 3 2 21 21 O 1.21420 * 120.00126 * 181.57891 * 20 19 3 22 22 H 1.07997 * 119.10512 * 0.04854 * 4 3 2 23 23 H 1.07996 * 122.50803 * 0.02562 * 6 5 4 24 24 H 1.07994 * 124.31624 * 180.26561 * 7 6 5 25 25 H 0.97003 * 119.99737 * 185.10801 * 14 13 11 26 26 H 1.08004 * 120.00199 * 1.58583 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2584 -1.1345 0.3897 5 6 4.6698 -1.1783 0.4055 6 6 5.5366 -2.2830 0.7854 7 6 6.8290 -2.0321 0.7004 8 16 7.1269 -0.3981 0.1408 9 6 5.4054 -0.0537 0.0208 10 6 4.7340 1.1335 -0.3867 11 6 5.4662 2.2642 -0.7741 12 1 5.1758 2.8205 -1.6530 13 6 6.5779 2.6738 -0.0187 14 7 6.7425 2.2258 1.1960 15 14 7.8204 3.8596 -0.7533 16 1 7.4127 5.2548 -0.4495 17 1 9.1603 3.5971 -0.1694 18 1 7.8760 3.6695 -2.2251 19 6 3.2718 1.1603 -0.3972 20 6 2.5736 2.3272 -0.7978 21 8 3.1893 3.3074 -1.1642 22 1 2.7024 -2.0106 0.6894 23 1 5.1510 -3.2373 1.1125 24 1 7.6045 -2.7440 0.9411 25 1 7.4678 2.5646 1.7438 26 1 1.4939 2.3444 -0.7769 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396214385.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:09 Heat of formation + Delta-G solvation = 18.403713 kcal Electronic energy + Delta-G solvation = -15802.198550 eV Core-core repulsion = 13129.770084 eV Total energy + Delta-G solvation = -2672.428466 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 257.025 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.44669 -38.80085 -37.69806 -36.29998 -35.01995 -32.08792 -30.60615 -27.88518 -25.67620 -24.26115 -22.41051 -21.40563 -19.90752 -18.29755 -17.93393 -17.24288 -16.77026 -16.49807 -15.41172 -15.26512 -14.91174 -14.48448 -14.43548 -14.38977 -14.03371 -13.76466 -13.60125 -13.40836 -13.06809 -12.90822 -12.74289 -12.25960 -11.79482 -11.62907 -11.36049 -10.92887 -10.31323 -9.91969 -9.19626 -8.98966 -8.19297 -6.63201 -0.41580 0.29347 1.03668 1.18478 1.36118 1.46706 1.50246 1.58998 1.65091 2.03893 2.13986 2.15226 2.66118 2.98662 3.38117 3.82503 4.09780 4.32604 4.58282 4.74765 4.84457 5.02052 5.15060 5.17564 5.33249 5.48561 5.58980 5.75419 5.93536 6.35099 6.41640 6.48812 6.63597 7.12549 8.02174 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.017566 B = 0.011291 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.574165 B = 2479.262907 C = 3916.573518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.287 3.713 3 C 0.045 3.955 4 C -0.135 4.135 5 C -0.053 4.053 6 C -0.132 4.132 7 C -0.209 4.209 8 S 0.106 5.894 9 C -0.171 4.171 10 C 0.160 3.840 11 C -0.421 4.421 12 H 0.093 0.907 13 C 0.040 3.960 14 N -0.765 5.765 15 Si 0.965 3.035 16 H -0.267 1.267 17 H -0.248 1.248 18 H -0.256 1.256 19 C -0.310 4.310 20 C 0.364 3.636 21 O -0.521 6.521 22 H 0.144 0.856 23 H 0.169 0.831 24 H 0.193 0.807 25 H 0.305 0.695 26 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 -7.075 0.916 8.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.027 4.027 3 C 0.039 3.961 4 C -0.159 4.159 5 C -0.064 4.064 6 C -0.162 4.162 7 C -0.343 4.343 8 S 0.373 5.627 9 C -0.288 4.288 10 C 0.153 3.847 11 C -0.447 4.447 12 H 0.110 0.890 13 C -0.183 4.183 14 N -0.388 5.388 15 Si 0.785 3.215 16 H -0.192 1.192 17 H -0.172 1.172 18 H -0.180 1.180 19 C -0.319 4.319 20 C 0.234 3.766 21 O -0.405 6.405 22 H 0.162 0.838 23 H 0.187 0.813 24 H 0.210 0.790 25 H 0.117 0.883 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.275 -5.850 0.672 7.906 hybrid contribution -0.677 -0.049 0.185 0.703 sum 4.599 -5.899 0.858 7.528 Atomic orbital electron populations 1.81142 1.12328 1.09512 1.10519 1.25829 0.92587 0.91958 0.92325 1.15610 0.82824 0.95311 1.02307 1.20356 0.91505 0.97359 1.06666 1.19472 0.93827 0.93064 1.00029 1.21117 0.91982 0.99248 1.03895 1.25665 1.00805 1.00843 1.07021 1.83859 1.04305 1.06161 1.68351 1.23342 0.96924 0.97436 1.11087 1.18073 0.89616 0.90961 0.86043 1.20048 1.06450 1.08710 1.09485 0.88957 1.26785 0.97962 0.98766 0.94762 1.69587 1.28206 1.33784 1.07206 0.85407 0.77509 0.78218 0.80386 1.19175 1.17174 1.17952 1.20272 0.93168 0.96548 1.21884 1.21989 0.93498 0.85906 0.75180 1.90442 1.72535 1.37536 1.40000 0.83815 0.81330 0.78996 0.88325 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.30 18.54 19.00 0.35 -16.95 15 2 C 0.29 10.62 13.86 88.33 1.22 11.84 15 3 C 0.05 1.79 5.75 -21.21 -0.12 1.66 15 4 C -0.14 -4.84 9.69 23.06 0.22 -4.61 15 5 C -0.05 -2.02 6.02 -20.31 -0.12 -2.15 15 6 C -0.13 -3.94 10.37 23.27 0.24 -3.70 15 7 C -0.21 -6.07 11.02 66.96 0.74 -5.33 15 8 S 0.11 4.01 20.28 -56.49 -1.15 2.86 15 9 C -0.17 -7.50 5.75 23.67 0.14 -7.36 15 10 C 0.16 7.84 5.46 -19.70 -0.11 7.73 15 11 C -0.42 -21.25 7.29 23.29 0.17 -21.08 15 12 H 0.09 4.94 6.44 -2.91 -0.02 4.92 15 13 C 0.04 1.82 4.42 85.44 0.38 2.20 15 14 N -0.76 -34.87 10.96 21.92 0.24 -34.63 15 15 Si 0.97 35.68 29.60 68.60 2.03 37.71 15 16 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 17 H -0.25 -8.25 7.11 99.48 0.71 -7.54 15 18 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 19 C -0.31 -14.30 5.95 -19.56 -0.12 -14.41 15 20 C 0.36 16.76 10.79 68.69 0.74 17.50 15 21 O -0.52 -27.21 14.55 -3.47 -0.05 -27.26 15 22 H 0.14 4.11 8.06 -2.91 -0.02 4.08 15 23 H 0.17 3.70 8.06 -2.91 -0.02 3.67 15 24 H 0.19 3.96 8.06 -2.91 -0.02 3.94 15 25 H 0.30 12.41 8.30 -92.71 -0.77 11.64 15 26 H 0.08 3.04 7.11 -2.91 -0.02 3.02 15 Total: -1.00 -56.36 257.63 6.05 -50.31 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.24 Total: 5.66 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 3.38 Total: -17.70 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.59 Total: -51.57 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.15 Total: 2.86 kcal Total: -56.36 6.05 -50.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396214385.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.712 kcal (2) G-P(sol) polarization free energy of solvation -56.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds